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SYNDIG1 synapse differentiation inducing 1 [ Gallus gallus (chicken) ]

Gene ID: 416717, updated on 3-Dec-2024

Summary

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Official Symbol
SYNDIG1provided by CGNC
Official Full Name
synapse differentiation inducing 1provided by CGNC
Primary source
CGNC:6575
See related
Ensembl:ENSGALG00010018855
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
TMEM90B; C20orf39
Orthologs
human mouse all
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Genomic context

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See SYNDIG1 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
6
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 3 NC_052534.1 (15392329..15457489)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 3 NC_052575.1 (15306494..15371680)

Chromosome 3 - NC_052534.1Genomic Context describing neighboring genes Neighboring gene microRNA 3526 Neighboring gene cystatin C Neighboring gene uncharacterized LOC107052878 Neighboring gene uncharacterized LOC121110394 Neighboring gene cystatin F Neighboring gene adipocyte plasma membrane associated protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in positive regulation of synapse assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synaptic vesicle clustering IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in excitatory synapse IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in intracellular membrane-bounded organelle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in postsynaptic density membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synaptic vesicle membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transmembrane protein 90B; synapse differentiation-inducing gene protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052534.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    15392329..15457489
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040698213.2 → XP_040554147.1  synapse differentiation-inducing gene protein 1

    UniProtKB/TrEMBL
    A0A8V0Z1R2, A0A8V0ZF24

  2. XM_015283540.4 → XP_015139026.2  synapse differentiation-inducing gene protein 1

    UniProtKB/TrEMBL
    A0A8V0Z1R2, A0A8V0ZF24
    Related
    ENSGALP00010027164.1, ENSGALT00010045542.1

  3. XM_046939533.1 → XP_046795489.1  synapse differentiation-inducing gene protein 1

    UniProtKB/TrEMBL
    A0A8V0Z1R2, A0A8V0ZF24
    Related
    ENSGALP00010027163.1, ENSGALT00010045541.1

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052575.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    15306494..15371680
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040668057.2 → XP_040523991.1  synapse differentiation-inducing gene protein 1

    UniProtKB/TrEMBL
    A0A8V0Z1R2, A0A8V0ZF24

  2. XM_040668056.2 → XP_040523990.1  synapse differentiation-inducing gene protein 1

    UniProtKB/TrEMBL
    A0A8V0Z1R2, A0A8V0ZF24

  3. XM_046915058.1 → XP_046771014.1  synapse differentiation-inducing gene protein 1

    UniProtKB/TrEMBL
    A0A8V0Z1R2, A0A8V0ZF24
Nucleotide Protein Strain
Heading Accession and Version

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