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RNPS1 RNA binding protein with serine rich domain 1 [ Gallus gallus (chicken) ]

Gene ID: 416756, updated on 17-Aug-2024

Summary

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Symbol
RNPS1provided by CGNC
Full Name
RNA binding protein with serine rich domain 1provided by CGNC
Primary source
CGNC:7058
See related
Ensembl:ENSGALG00010017433
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See RNPS1 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
8
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 14 NC_052545.1 (13833288..13843240, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 14 NC_052586.1 (13952636..13962617, complement)

Chromosome 14 - NC_052545.1Genomic Context describing neighboring genes Neighboring gene intraflagellar transport 140 Neighboring gene transmembrane protein 204 Neighboring gene telomere maintenance 2 Neighboring gene uncharacterized LOC416755 Neighboring gene uncharacterized LOC112533456 Neighboring gene amidohydrolase domain containing 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of ASAP complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
RNA-binding protein with serine-rich domain 1
Names
RNA binding protein S1, serine-rich domain

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052545.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    13833288..13843240 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_415051.8 → XP_415051.3  RNA-binding protein with serine-rich domain 1 isoform X1

    See identical proteins and their annotated locations for XP_415051.3

    UniProtKB/TrEMBL
    E1BV45
    Related
    ENSGALP00010024638.1, ENSGALT00010042079.1
    Conserved Domains (1) summary
    cd12365
    Location:140 → 213
    RRM_RNPS1; RNA recognition motif (RRM) found in RNA-binding protein with serine-rich domain 1 (RNPS1) and similar proteins

  2. XM_004945441.5 → XP_004945498.2  RNA-binding protein with serine-rich domain 1 isoform X2

    Conserved Domains (1) summary
    smart00360
    Location:162 → 234
    RRM; RNA recognition motif

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052586.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    13952636..13962617 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040683661.2 → XP_040539595.1  RNA-binding protein with serine-rich domain 1 isoform X1

    UniProtKB/TrEMBL
    E1BV45
    Conserved Domains (1) summary
    cd12365
    Location:140 → 213
    RRM_RNPS1; RNA recognition motif (RRM) found in RNA-binding protein with serine-rich domain 1 (RNPS1) and similar proteins

  2. XM_040683662.2 → XP_040539596.1  RNA-binding protein with serine-rich domain 1 isoform X2

Nucleotide Protein
Heading Accession and Version

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