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SART3 squamous cell carcinoma antigen recognized by T-cells 3 [ Gallus gallus (chicken) ]

Gene ID: 416890, updated on 17-Aug-2024

Summary

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Symbol
SART3provided by CGNC
Full Name
squamous cell carcinoma antigen recognized by T-cells 3provided by CGNC
Primary source
CGNC:3629
See related
Ensembl:ENSGALG00010022467
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See SART3 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
20
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 15 NC_052546.1 (6520043..6535922, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 15 NC_052587.1 (6530557..6546439, complement)

Chromosome 15 - NC_052546.1Genomic Context describing neighboring genes Neighboring gene WSC domain containing 2 Neighboring gene chemerin chemokine-like receptor 1 Neighboring gene FIC domain containing Neighboring gene iron-sulfur cluster assembly enzyme Neighboring gene transmembrane protein 119

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
squamous cell carcinoma antigen recognized by T-cells 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052546.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    6520043..6535922 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040648492.2 → XP_040504426.1  squamous cell carcinoma antigen recognized by T-cells 3 isoform X2

    UniProtKB/TrEMBL
    A0A8V0ZI49, A0A8V0ZI54
    Related
    ENSGALP00010033020.1, ENSGALT00010054660.1
    Conserved Domains (3) summary
    smart00360
    Location:772 → 843
    RRM; RNA recognition motif
    COG5107
    Location:53 → 401
    RNA14; Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
    TIGR01622
    Location:643 → 847
    SF-CC1; splicing factor, CC1-like family

  2. XM_025155690.3 → XP_025011458.2  squamous cell carcinoma antigen recognized by T-cells 3 isoform X1

    UniProtKB/TrEMBL
    A0A8V0ZI49, A0A8V0ZI54
    Related
    ENSGALP00010033012.1, ENSGALT00010054649.1
    Conserved Domains (3) summary
    smart00360
    Location:772 → 843
    RRM; RNA recognition motif
    COG5107
    Location:53 → 401
    RNA14; Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
    TIGR01622
    Location:643 → 847
    SF-CC1; splicing factor, CC1-like family

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052587.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    6530557..6546439 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040684665.2 → XP_040540599.1  squamous cell carcinoma antigen recognized by T-cells 3 isoform X2

    UniProtKB/TrEMBL
    A0A8V0ZI49, A0A8V0ZI54
    Conserved Domains (3) summary
    smart00360
    Location:772 → 843
    RRM; RNA recognition motif
    COG5107
    Location:53 → 401
    RNA14; Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
    TIGR01622
    Location:643 → 847
    SF-CC1; splicing factor, CC1-like family

  2. XM_040684664.2 → XP_040540598.1  squamous cell carcinoma antigen recognized by T-cells 3 isoform X1

    UniProtKB/TrEMBL
    A0A8V0ZI49, A0A8V0ZI54
    Conserved Domains (3) summary
    smart00360
    Location:772 → 843
    RRM; RNA recognition motif
    COG5107
    Location:53 → 401
    RNA14; Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
    TIGR01622
    Location:643 → 847
    SF-CC1; splicing factor, CC1-like family
Nucleotide Protein Strain
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