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USP30 ubiquitin specific peptidase 30 [ Gallus gallus (chicken) ]

Gene ID: 416896, updated on 17-Aug-2024

Summary

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Symbol
USP30provided by CGNC
Full Name
ubiquitin specific peptidase 30provided by CGNC
Primary source
CGNC:50370
See related
Ensembl:ENSGALG00010021458
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See USP30 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
13
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 15 NC_052546.1 (6651814..6662956)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 15 NC_052587.1 (6662374..6673543)

Chromosome 15 - NC_052546.1Genomic Context describing neighboring genes Neighboring gene D-amino acid oxidase Neighboring gene SV2 related protein Neighboring gene alkB homolog 2, alpha-ketoglutarate dependent dioxygenase Neighboring gene microRNA 6648-1 Neighboring gene uracil DNA glycosylase Neighboring gene acetyl-CoA carboxylase beta

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ubiquitin carboxyl-terminal hydrolase 30
Names
ubiquitin specific protease 30
XP_015131006.1
XP_025011463.2
XP_025011464.2
XP_040540605.1
XP_040540606.2
XP_040540607.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052546.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    6651814..6662956
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015275520.4 → XP_015131006.1  ubiquitin carboxyl-terminal hydrolase 30 isoform X3

    Conserved Domains (1) summary
    cd02662
    Location:1 → 417
    Peptidase_C19F; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...

  2. XM_025155695.3 → XP_025011463.2  ubiquitin carboxyl-terminal hydrolase 30 isoform X1

    UniProtKB/TrEMBL
    A0A8V0ZJW5
    Related
    ENSGALP00010031046.1, ENSGALT00010052012.1
    Conserved Domains (1) summary
    cd02662
    Location:59 → 485
    Peptidase_C19F; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...

  3. XM_025155696.3 → XP_025011464.2  ubiquitin carboxyl-terminal hydrolase 30 isoform X2

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052587.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    6662374..6673543
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040684673.2 → XP_040540607.1  ubiquitin carboxyl-terminal hydrolase 30 isoform X3

    Conserved Domains (1) summary
    cd02662
    Location:1 → 417
    Peptidase_C19F; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...

  2. XM_040684671.2 → XP_040540605.1  ubiquitin carboxyl-terminal hydrolase 30 isoform X1

    UniProtKB/TrEMBL
    A0A8V0ZJW5
    Conserved Domains (1) summary
    cd02662
    Location:59 → 485
    Peptidase_C19F; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...

  3. XM_040684672.2 → XP_040540606.2  ubiquitin carboxyl-terminal hydrolase 30 isoform X2

Nucleotide Protein Strain
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