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RTN4R reticulon 4 receptor [ Gallus gallus (chicken) ]

Gene ID: 417001, updated on 17-Aug-2024

Summary

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Official Symbol
RTN4Rprovided by CGNC
Official Full Name
reticulon 4 receptorprovided by CGNC
Primary source
CGNC:50402
See related
Ensembl:ENSGALG00010000271
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See RTN4R in Genome Data Viewer
Location:
chromosome: 15
Exon count:
2
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 15 NC_052546.1 (10342496..10407596)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 15 NC_052587.1 (10342220..10407405)

Chromosome 15 - NC_052546.1Genomic Context describing neighboring genes Neighboring gene scavenger receptor class F member 2 Neighboring gene proline dehydrogenase 1 Neighboring gene uncharacterized LOC124417234 Neighboring gene uncharacterized LOC107054686

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A multi-domain fragment of Nogo-A protein is a potent inhibitor of cortical axon regeneration via Nogo receptor 1. Huebner EA, et al. J Biol Chem, 2011 May 20. PMID 21454605, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. A multi-domain fragment of Nogo-A protein is a potent inhibitor of cortical axon regeneration via Nogo receptor 1.
    Title: A multi-domain fragment of Nogo-A protein is a potent inhibitor of cortical axon regeneration via Nogo receptor 1.
Submit: New GeneRIF Correction

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
reticulon-4 receptor

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052546.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    10342496..10407596
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_415292.8 → XP_415292.4  reticulon-4 receptor

    UniProtKB/TrEMBL
    A0A8V0X765, F1NRZ3
    Related
    ENSGALP00010000297.1, ENSGALT00010000524.1
    Conserved Domains (2) summary
    sd00033
    Location:60 → 82
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:81 → 142
    LRR_8; Leucine rich repeat

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052587.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    10342220..10407405
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040684240.2 → XP_040540174.1  reticulon-4 receptor

    UniProtKB/TrEMBL
    A0A8V0X765, F1NRZ3
    Conserved Domains (2) summary
    sd00033
    Location:60 → 82
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:81 → 142
    LRR_8; Leucine rich repeat
Nucleotide Protein
Heading Accession and Version

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