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GAPVD1 GTPase activating protein and VPS9 domains 1 [ Gallus gallus (chicken) ]

Gene ID: 417095, updated on 3-Dec-2024

Summary

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Symbol
GAPVD1provided by CGNC
Full Name
GTPase activating protein and VPS9 domains 1provided by CGNC
Primary source
CGNC:660
See related
Ensembl:ENSGALG00010027973
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See GAPVD1 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
31
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 17 NC_052548.1 (10204151..10235887)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 17 NC_052589.1 (9614633..9646368)

Chromosome 17 - NC_052548.1Genomic Context describing neighboring genes Neighboring gene translation initiation factor IF-2-like Neighboring gene Rab9 effector protein with kelch motifs Neighboring gene heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) Neighboring gene mitogen-activated protein kinase associated protein 1 Neighboring gene uncharacterized LOC112530000 Neighboring gene PBX homeobox 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables guanyl-nucleotide exchange factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables small GTPase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endocytic vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
GTPase-activating protein and VPS9 domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001282210.2 → NP_001269139.1  GTPase-activating protein and VPS9 domain-containing protein 1

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000308
    UniProtKB/TrEMBL
    A0A8V1ABD6, E1C268
    Related
    ENSGALP00010041535.1, ENSGALT00010067792.1
    Conserved Domains (2) summary
    cd05129
    Location:84 → 449
    RasGAP_RAP6; Ras-GTPase Activating Domain of Rab5-activating protein 6
    pfam02204
    Location:1336 → 1437
    VPS9; Vacuolar sorting protein 9 (VPS9) domain

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052548.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    10204151..10235887
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046901706.1 → XP_046757662.1  GTPase-activating protein and VPS9 domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A3Q2TVQ8, A0A8V1ABD6

  2. XM_046901713.1 → XP_046757669.1  GTPase-activating protein and VPS9 domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A3Q2TVQ8, A0A8V1ABD6

  3. XM_046901709.1 → XP_046757665.1  GTPase-activating protein and VPS9 domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A3Q2TVQ8, A0A8V1ABD6

  4. XM_046901707.1 → XP_046757663.1  GTPase-activating protein and VPS9 domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A3Q2TVQ8, A0A8V1ABD6

  5. XM_046901705.1 → XP_046757661.1  GTPase-activating protein and VPS9 domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A3Q2TVQ8, A0A8V1ABD6

  6. XM_046901712.1 → XP_046757668.1  GTPase-activating protein and VPS9 domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A3Q2TVQ8, A0A8V1ABD6

  7. XM_046901708.1 → XP_046757664.1  GTPase-activating protein and VPS9 domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A3Q2TVQ8, A0A8V1ABD6

  8. XM_046901716.1 → XP_046757672.1  GTPase-activating protein and VPS9 domain-containing protein 1 isoform X4

    UniProtKB/TrEMBL
    A0A8V1ABD6

  9. XM_015279395.4 → XP_015134881.1  GTPase-activating protein and VPS9 domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A3Q2TVQ8, A0A8V1ABD6
    Related
    ENSGALP00010041533.1, ENSGALT00010067790.1
    Conserved Domains (3) summary
    cd05129
    Location:84 → 449
    RasGAP_RAP6; Ras-GTPase Activating Domain of Rab5-activating protein 6
    pfam02204
    Location:1384 → 1485
    VPS9; Vacuolar sorting protein 9 (VPS9) domain
    pfam18151
    Location:1273 → 1336
    DUF5601; Domain of unknown function (DUF5601)

  10. XM_046901714.1 → XP_046757670.1  GTPase-activating protein and VPS9 domain-containing protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A8V1ABD6

  11. XM_015279406.4 → XP_015134892.1  GTPase-activating protein and VPS9 domain-containing protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A8V1ABD6
    Conserved Domains (2) summary
    cd05129
    Location:84 → 449
    RasGAP_RAP6; Ras-GTPase Activating Domain of Rab5-activating protein 6
    pfam02204
    Location:1363 → 1464
    VPS9; Vacuolar sorting protein 9 (VPS9) domain

  12. XM_015279407.4 → XP_015134893.1  GTPase-activating protein and VPS9 domain-containing protein 1 isoform X4

    UniProtKB/TrEMBL
    A0A8V1ABD6
    Conserved Domains (2) summary
    cd05129
    Location:84 → 449
    RasGAP_RAP6; Ras-GTPase Activating Domain of Rab5-activating protein 6
    pfam02204
    Location:1357 → 1458
    VPS9; Vacuolar sorting protein 9 (VPS9) domain

  13. XM_015279408.4 → XP_015134894.1  GTPase-activating protein and VPS9 domain-containing protein 1 isoform X5

    UniProtKB/TrEMBL
    A0A8V1ABD6, E1C268
    Conserved Domains (2) summary
    cd05129
    Location:84 → 449
    RasGAP_RAP6; Ras-GTPase Activating Domain of Rab5-activating protein 6
    pfam02204
    Location:1336 → 1437
    VPS9; Vacuolar sorting protein 9 (VPS9) domain

  14. XM_015279404.4 → XP_015134890.1  GTPase-activating protein and VPS9 domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A3Q2TVQ8, A0A8V1ABD6
    Conserved Domains (3) summary
    cd05129
    Location:84 → 449
    RasGAP_RAP6; Ras-GTPase Activating Domain of Rab5-activating protein 6
    pfam02204
    Location:1384 → 1485
    VPS9; Vacuolar sorting protein 9 (VPS9) domain
    pfam18151
    Location:1273 → 1336
    DUF5601; Domain of unknown function (DUF5601)

  15. XM_046901717.1 → XP_046757673.1  GTPase-activating protein and VPS9 domain-containing protein 1 isoform X4

    UniProtKB/TrEMBL
    A0A8V1ABD6
    Related
    ENSGALP00010041534.1, ENSGALT00010067791.1

  16. XM_046901711.1 → XP_046757667.1  GTPase-activating protein and VPS9 domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A3Q2TVQ8, A0A8V1ABD6

  17. XM_040649040.2 → XP_040504974.1  GTPase-activating protein and VPS9 domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A3Q2TVQ8, A0A8V1ABD6
    Conserved Domains (3) summary
    cd05129
    Location:84 → 449
    RasGAP_RAP6; Ras-GTPase Activating Domain of Rab5-activating protein 6
    pfam02204
    Location:1384 → 1485
    VPS9; Vacuolar sorting protein 9 (VPS9) domain
    pfam18151
    Location:1273 → 1336
    DUF5601; Domain of unknown function (DUF5601)

  18. XM_046901710.1 → XP_046757666.1  GTPase-activating protein and VPS9 domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A3Q2TVQ8, A0A8V1ABD6

  19. XM_040649041.2 → XP_040504975.1  GTPase-activating protein and VPS9 domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A3Q2TVQ8, A0A8V1ABD6
    Conserved Domains (3) summary
    cd05129
    Location:84 → 449
    RasGAP_RAP6; Ras-GTPase Activating Domain of Rab5-activating protein 6
    pfam02204
    Location:1384 → 1485
    VPS9; Vacuolar sorting protein 9 (VPS9) domain
    pfam18151
    Location:1273 → 1336
    DUF5601; Domain of unknown function (DUF5601)

  20. XM_025156041.3 → XP_025011809.1  GTPase-activating protein and VPS9 domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A3Q2TVQ8, A0A8V1ABD6
    Conserved Domains (3) summary
    cd05129
    Location:84 → 449
    RasGAP_RAP6; Ras-GTPase Activating Domain of Rab5-activating protein 6
    pfam02204
    Location:1384 → 1485
    VPS9; Vacuolar sorting protein 9 (VPS9) domain
    pfam18151
    Location:1273 → 1336
    DUF5601; Domain of unknown function (DUF5601)

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052589.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    9614633..9646368
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046928828.1 → XP_046784784.1  GTPase-activating protein and VPS9 domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A3Q2TVQ8, A0A8V1ABD6

  2. XM_046928836.1 → XP_046784792.1  GTPase-activating protein and VPS9 domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A3Q2TVQ8, A0A8V1ABD6

  3. XM_046928832.1 → XP_046784788.1  GTPase-activating protein and VPS9 domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A3Q2TVQ8, A0A8V1ABD6

  4. XM_046928830.1 → XP_046784786.1  GTPase-activating protein and VPS9 domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A3Q2TVQ8, A0A8V1ABD6

  5. XM_046928826.1 → XP_046784782.1  GTPase-activating protein and VPS9 domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A3Q2TVQ8, A0A8V1ABD6

  6. XM_046928835.1 → XP_046784791.1  GTPase-activating protein and VPS9 domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A3Q2TVQ8, A0A8V1ABD6

  7. XM_046928831.1 → XP_046784787.1  GTPase-activating protein and VPS9 domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A3Q2TVQ8, A0A8V1ABD6

  8. XM_046928840.1 → XP_046784796.1  GTPase-activating protein and VPS9 domain-containing protein 1 isoform X4

    UniProtKB/TrEMBL
    A0A8V1ABD6

  9. XM_046928824.1 → XP_046784780.1  GTPase-activating protein and VPS9 domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A3Q2TVQ8, A0A8V1ABD6

  10. XM_046928837.1 → XP_046784793.1  GTPase-activating protein and VPS9 domain-containing protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A8V1ABD6

  11. XM_046928838.1 → XP_046784794.1  GTPase-activating protein and VPS9 domain-containing protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A8V1ABD6

  12. XM_046928839.1 → XP_046784795.1  GTPase-activating protein and VPS9 domain-containing protein 1 isoform X4

    UniProtKB/TrEMBL
    A0A8V1ABD6

  13. XM_046928842.1 → XP_046784798.1  GTPase-activating protein and VPS9 domain-containing protein 1 isoform X5

    UniProtKB/TrEMBL
    A0A8V1ABD6, E1C268

  14. XM_046928825.1 → XP_046784781.1  GTPase-activating protein and VPS9 domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A3Q2TVQ8, A0A8V1ABD6

  15. XM_046928841.1 → XP_046784797.1  GTPase-activating protein and VPS9 domain-containing protein 1 isoform X4

    UniProtKB/TrEMBL
    A0A8V1ABD6

  16. XM_046928834.1 → XP_046784790.1  GTPase-activating protein and VPS9 domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A3Q2TVQ8, A0A8V1ABD6

  17. XM_046928827.1 → XP_046784783.1  GTPase-activating protein and VPS9 domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A3Q2TVQ8, A0A8V1ABD6

  18. XM_046928833.1 → XP_046784789.1  GTPase-activating protein and VPS9 domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A3Q2TVQ8, A0A8V1ABD6

  19. XM_046928829.1 → XP_046784785.1  GTPase-activating protein and VPS9 domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A3Q2TVQ8, A0A8V1ABD6
Nucleotide Protein Strain
Heading Accession and Version

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