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red red Malpighian tubules [ Drosophila melanogaster (fruit fly) ]

Gene ID: 41738, updated on 9-Dec-2024

Summary

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Official Symbol
redprovided by FlyBase
Official Full Name
red Malpighian tubulesprovided by FlyBase
Primary source
FLYBASE:FBgn0285913
Locus tag
Dmel_CG12207
See related
AllianceGenome:FB:FBgn0285913
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
bw-l; CG12207; Dmel\CG12207
Summary
Is expressed in several structures, including Malpighian tubule primordium; embryonic Malpighian tubule; embryonic/larval midgut; and embryonic/larval midgut primordium. Orthologous to human LYSMD1 (LysM domain containing 1) and LYSMD2 (LysM domain containing 2). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
all
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Genomic context

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See red in Genome Data Viewer
Location:
88B1-88B3; 3-55 cM
Exon count:
8
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (14289071..14302276)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (10114793..10127998)

Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene antisense RNA:CR46020 Neighboring gene trithorax Neighboring gene long non-coding RNA:CR45596 Neighboring gene Intraflagellar transport 54 Neighboring gene suppressor of Hairy wing Neighboring gene RNA polymerase II subunit I

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Position Effects and Variegation Enhancers in an Autosomal Region of DROSOPHILA MELANOGASTER. Henikoff S. Genetics, 1979 Sep. PMID 17248959, Free PMC Article
  2. Studies of l(3)c43hs1 a polyphasic, temperature-sensitive mutant of Drosophila melanogaster with a variety of imaginal disc defects. Martin P, et al. Dev Biol, 1977 Feb. PMID 402295
  3. An Eye on Trafficking Genes: Identification of Four Eye Color Mutations in Drosophila. Grant P, et al. G3 (Bethesda), 2016 Oct 13. PMID 27558665, Free PMC Article
  4. Isolation and characterization of the Drosophila melanogaster cDNA encoding the sepiapterin reductase. Seong C, et al. Biochim Biophys Acta, 1998 Nov 26. PMID 9838142
  5. Muller "Elements" in Drosophila: How the Search for the Genetic Basis for Speciation Led to the Birth of Comparative Genomics. Schaeffer SW. Genetics, 2018 Sep. PMID 30166445, Free PMC Article

See all (39) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

General protein information

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Preferred Names
red malpighian tubules
Names
CG12207-PA
CG12207-PB
CG12207-PC
CG12207-PD
CG12207-PE
CG12207-PF
CG12207-PG
brown-like
red-PA
red-PB
red-PC
red-PD
red-PE
red-PF
red-PG

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_033777.3 Reference assembly

    Range
    14289071..14302276
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001300396.1 → NP_001287325.1  red malpighian tubules, isoform G [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001287325.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A2Z1YWR5, A0A2Z1Z390, Q961C8
    Conserved Domains (2) summary
    cd00118
    Location:62 → 106
    LysM; Lysine Motif is a small domain involved in binding peptidoglycan
    COG1388
    Location:64 → 113
    LysM; LysM repeat [Cell wall/membrane/envelope biogenesis]

  2. NM_142095.4 → NP_650352.1  red malpighian tubules, isoform B [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_650352.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A2Z1YWR5, A0A2Z1Z390, Q961C8
    Related
    FBpp0082380
    Conserved Domains (2) summary
    cd00118
    Location:62 → 106
    LysM; Lysine Motif is a small domain involved in binding peptidoglycan
    COG1388
    Location:64 → 113
    LysM; LysM repeat [Cell wall/membrane/envelope biogenesis]

  3. NM_001260168.1 → NP_001247097.1  red malpighian tubules, isoform F [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001247097.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A2Z1YWR5, A0A2Z1Z390, Q961C8
    Conserved Domains (2) summary
    cd00118
    Location:62 → 106
    LysM; Lysine Motif is a small domain involved in binding peptidoglycan
    COG1388
    Location:64 → 113
    LysM; LysM repeat [Cell wall/membrane/envelope biogenesis]

  4. NM_169572.3 → NP_731894.1  red malpighian tubules, isoform C [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_731894.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A2Z1YWR5, A0A2Z1Z390, Q961C8
    Related
    FBpp0082381
    Conserved Domains (2) summary
    cd00118
    Location:62 → 106
    LysM; Lysine Motif is a small domain involved in binding peptidoglycan
    COG1388
    Location:64 → 113
    LysM; LysM repeat [Cell wall/membrane/envelope biogenesis]

  5. NM_169573.3 → NP_731895.1  red malpighian tubules, isoform A [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_731895.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A2Z1Z695, A0A2Z1Z8F4, Q9I7J4
    Related
    FBpp0082382
    Conserved Domains (2) summary
    cd00118
    Location:39 → 83
    LysM; Lysine Motif is a small domain involved in binding peptidoglycan
    COG1388
    Location:41 → 90
    LysM; LysM repeat [Cell wall/membrane/envelope biogenesis]

  6. NM_001260166.2 → NP_001247095.1  red malpighian tubules, isoform D [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001247095.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A2Z1Z695, A0A2Z1Z8F4, Q9I7J4
    Conserved Domains (2) summary
    cd00118
    Location:39 → 83
    LysM; Lysine Motif is a small domain involved in binding peptidoglycan
    COG1388
    Location:41 → 90
    LysM; LysM repeat [Cell wall/membrane/envelope biogenesis]

  7. NM_001260167.1 → NP_001247096.1  red malpighian tubules, isoform E [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001247096.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A2Z1Z695, A0A2Z1Z8F4, Q9I7J4
    Conserved Domains (2) summary
    cd00118
    Location:39 → 83
    LysM; Lysine Motif is a small domain involved in binding peptidoglycan
    COG1388
    Location:41 → 90
    LysM; LysM repeat [Cell wall/membrane/envelope biogenesis]
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q961C8 Q961C8
Q9I7J4 Q9I7J4

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