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NSUN5 NOP2/Sun RNA methyltransferase family member 5 [ Gallus gallus (chicken) ]

Gene ID: 417462, updated on 17-Aug-2024

Summary

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Symbol
NSUN5provided by CGNC
Full Name
NOP2/Sun RNA methyltransferase family member 5provided by CGNC
Primary source
CGNC:50516
See related
Ensembl:ENSGALG00010029543
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See NSUN5 in Genome Data Viewer
Location:
chromosome: 19
Exon count:
10
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 19 NC_052550.1 (838306..841267)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 19 NC_052591.1 (568358..571328)

Chromosome 19 - NC_052550.1Genomic Context describing neighboring genes Neighboring gene FK506 binding protein 6 Neighboring gene tripartite motif containing 50 Neighboring gene POM121 transmembrane nucleoporin C Neighboring gene huntingtin interacting protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables S-adenosylmethionine-dependent methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in rRNA base methylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable 28S rRNA (cytosine-C(5))-methyltransferase; 28S rRNA (cytosine-C(5))-methyltransferase
Names
NOL1/NOP2/Sun domain family, member 5
NOP2/Sun domain family, member 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052550.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    838306..841267
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_415710.8 → XP_415710.5  28S rRNA (cytosine-C(5))-methyltransferase

    UniProtKB/TrEMBL
    A0A8V1AML9
    Related
    ENSGALP00010044103.1, ENSGALT00010071413.1
    Conserved Domains (1) summary
    COG0144
    Location:37 → 422
    RsmB; 16S rRNA C967 or C1407 C5-methylase, RsmB/RsmF family [Translation, ribosomal structure and biogenesis]

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052591.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    568358..571328
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040687549.2 → XP_040543483.1  28S rRNA (cytosine-C(5))-methyltransferase

    UniProtKB/TrEMBL
    A0A8V1AML9
    Conserved Domains (1) summary
    COG0144
    Location:37 → 422
    RsmB; 16S rRNA C967 or C1407 C5-methylase, RsmB/RsmF family [Translation, ribosomal structure and biogenesis]
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials