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SPNS2 spinster homolog 2 [ Gallus gallus (chicken) ]

Gene ID: 417492, updated on 3-Dec-2024

Summary

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Official Symbol
SPNS2provided by CGNC
Official Full Name
spinster homolog 2provided by CGNC
Primary source
CGNC:951
See related
Ensembl:ENSGALG00010029425
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See SPNS2 in Genome Data Viewer
Location:
chromosome: 19
Exon count:
15
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 19 NC_052550.1 (3425410..3551160, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 19 NC_052591.1 (3154113..3279872, complement)

Chromosome 19 - NC_052550.1Genomic Context describing neighboring genes Neighboring gene linker for activation of T cells family member 2 Neighboring gene eukaryotic translation initiation factor 4H Neighboring gene uncharacterized LOC107054785 Neighboring gene MYB binding protein 1a Neighboring gene microRNA 7444 Neighboring gene uncharacterized LOC121107290 Neighboring gene sphingolipid transporter 3 (putative) Neighboring gene ubiquitin conjugating enzyme E2 G1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sphingolipid transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in lipid transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphingosine-1-phosphate receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sphingosine-1-phosphate transporter SPNS2; protein spinster homolog 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001389690.2 → NP_001376619.1  sphingosine-1-phosphate transporter SPNS2

    Status: PROVISIONAL

    Source sequence(s)
    JAENSK010000323
    UniProtKB/TrEMBL
    A0A8V1ACY4, A0A8V1AIA3
    Related
    ENSGALP00010043874.1, ENSGALT00010071183.1
    Conserved Domains (1) summary
    cd17328
    Location:81 → 495
    MFS_spinster_like; Protein spinster and spinster homologs of the Major Facilitator Superfamily of transporters

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052550.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    3425410..3551160 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046902323.1 → XP_046758279.1  protein spinster homolog 2 isoform X1

    UniProtKB/TrEMBL
    A0A8V1AIA3

RNA

  1. XR_005840856.2 RNA Sequence

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052591.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    3154113..3279872 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046929990.1 → XP_046785946.1  protein spinster homolog 2 isoform X1

    UniProtKB/TrEMBL
    A0A8V1AIA3

RNA

  1. XR_006936581.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials