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TMEM199 transmembrane protein 199 [ Gallus gallus (chicken) ]

Gene ID: 417566, updated on 17-Aug-2024

Summary

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Official Symbol
TMEM199provided by CGNC
Official Full Name
transmembrane protein 199provided by CGNC
Primary source
CGNC:16688
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
C17orf32
Orthologs
human mouse all
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Genomic context

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See TMEM199 in Genome Data Viewer
Location:
chromosome: 19
Exon count:
6
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 19 NC_052550.1 (6120574..6122839)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 19 NC_052591.1 (5857077..5859342)

Chromosome 19 - NC_052550.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORD91 family Neighboring gene TSR1 ribosome maturation factor Neighboring gene DNA polymerase delta interacting protein 2 Neighboring gene SEBOX homeobox Neighboring gene kinesin family member 12 Neighboring gene vitronectin Neighboring gene sterile alpha and TIR motif containing 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in vacuolar proton-transporting V-type ATPase complex assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endomembrane system IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transmembrane protein 199

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052550.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    6120574..6122839
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_415812.7 → XP_415812.2  transmembrane protein 199

    UniProtKB/TrEMBL
    E1BVM0
    Conserved Domains (1) summary
    pfam11712
    Location:65 → 185
    Vma12; Endoplasmic reticulum-based factor for assembly of V-ATPase

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052591.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    5857077..5859342
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040687227.2 → XP_040543161.1  transmembrane protein 199

    Conserved Domains (1) summary
    pfam11712
    Location:65 → 185
    Vma12; Endoplasmic reticulum-based factor for assembly of V-ATPase
Nucleotide Protein
Heading Accession and Version

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