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NCOR1 nuclear receptor corepressor 1 [ Gallus gallus (chicken) ]

Gene ID: 417598, updated on 3-Dec-2024

Summary

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Symbol
NCOR1provided by CGNC
Full Name
nuclear receptor corepressor 1provided by CGNC
Primary source
CGNC:3303
See related
Ensembl:ENSGALG00010029731
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See NCOR1 in Genome Data Viewer
Location:
chromosome: 19
Exon count:
50
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 19 NC_052550.1 (6950599..7006991, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 19 NC_052591.1 (6687666..6744031, complement)

Chromosome 19 - NC_052550.1Genomic Context describing neighboring genes Neighboring gene adenosine A2b receptor Neighboring gene zinc finger SWIM-type containing 7 Neighboring gene tetratricopeptide repeat domain 19 Neighboring gene phosphatidylinositol glycan anchor biosynthesis class L Neighboring gene polyubiquitin-C-like Neighboring gene centromere protein V Neighboring gene transient receptor potential cation channel subfamily V member 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Effects of dried natto diet on the transcript levels of the peroxisome proliferator-activated receptor-γ, coactivator-1α and -1β, and nuclear receptor corepressor 1 genes in laying hens. Seo Y, et al. Anim Sci J, 2021 Jan-Dec. PMID 33624372
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Effects of dried natto diet on the transcript levels of the peroxisome proliferator-activated receptor-gamma, coactivator-1alpha and -1beta, and nuclear receptor corepressor 1 genes in laying hens.
    Title: Effects of dried natto diet on the transcript levels of the peroxisome proliferator-activated receptor-γ, coactivator-1α and -1β, and nuclear receptor corepressor 1 genes in laying hens.
Submit: New GeneRIF Correction

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nuclear thyroid hormone receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription corepressor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nuclear receptor corepressor 1
Names
nuclear receptor co-repressor 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052550.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    6950599..7006991 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040650459.2 → XP_040506393.1  nuclear receptor corepressor 1 isoform X1

    UniProtKB/TrEMBL
    A0A8V1AKD2
    Conserved Domains (2) summary
    cd00167
    Location:632 → 675
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
    TIGR03835
    Location:715 → 898
    termin_org_DnaJ; terminal organelle assembly protein TopJ

  2. XM_040650458.2 → XP_040506392.1  nuclear receptor corepressor 1 isoform X1

    UniProtKB/TrEMBL
    A0A8V1AKD2
    Related
    ENSGALP00010044611.1, ENSGALT00010071921.1
    Conserved Domains (2) summary
    cd00167
    Location:632 → 675
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
    TIGR03835
    Location:715 → 898
    termin_org_DnaJ; terminal organelle assembly protein TopJ

  3. XM_004946657.5 → XP_004946714.2  nuclear receptor corepressor 1 isoform X4

    UniProtKB/TrEMBL
    A0A8V1AKD2
    Conserved Domains (2) summary
    cd00167
    Location:632 → 675
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
    TIGR03835
    Location:715 → 898
    termin_org_DnaJ; terminal organelle assembly protein TopJ

  4. XM_004946655.5 → XP_004946712.2  nuclear receptor corepressor 1 isoform X2

    UniProtKB/TrEMBL
    A0A8V1AKD2
    Conserved Domains (2) summary
    cd00167
    Location:632 → 675
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
    TIGR03835
    Location:715 → 898
    termin_org_DnaJ; terminal organelle assembly protein TopJ

  5. XM_004946656.5 → XP_004946713.2  nuclear receptor corepressor 1 isoform X3

    UniProtKB/TrEMBL
    A0A8V1AKD2
    Conserved Domains (2) summary
    PRK08691
    Location:688 → 852
    PRK08691; DNA polymerase III subunits gamma and tau; Validated
    cd00167
    Location:632 → 675
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...

  6. XM_415843.8 → XP_415843.4  nuclear receptor corepressor 1 isoform X1

    UniProtKB/TrEMBL
    A0A8V1AKD2
    Related
    ENSGALP00010044612.1, ENSGALT00010071922.1
    Conserved Domains (2) summary
    cd00167
    Location:632 → 675
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
    TIGR03835
    Location:715 → 898
    termin_org_DnaJ; terminal organelle assembly protein TopJ

  7. XM_046902620.1 → XP_046758576.1  nuclear receptor corepressor 1 isoform X1

    UniProtKB/TrEMBL
    A0A8V1AKD2

  8. XM_004946661.4 → XP_004946718.2  nuclear receptor corepressor 1 isoform X5

    Conserved Domains (2) summary
    cd00167
    Location:130 → 173
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
    TIGR03835
    Location:213 → 396
    termin_org_DnaJ; terminal organelle assembly protein TopJ

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052591.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    6687666..6744031 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040687327.2 → XP_040543261.1  nuclear receptor corepressor 1 isoform X1

    UniProtKB/TrEMBL
    A0A8V1AKD2
    Conserved Domains (4) summary
    cd00167
    Location:443 → 485
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
    pfam00249
    Location:632 → 675
    Myb_DNA-binding; Myb-like DNA-binding domain
    pfam15784
    Location:152 → 241
    GPS2_interact; G-protein pathway suppressor 2-interacting domain
    pfam16001
    Location:703 → 908
    DUF4775; Domain of unknown function (DUF4775)

  2. XM_040687326.2 → XP_040543260.1  nuclear receptor corepressor 1 isoform X1

    UniProtKB/TrEMBL
    A0A8V1AKD2
    Conserved Domains (4) summary
    cd00167
    Location:443 → 485
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
    pfam00249
    Location:632 → 675
    Myb_DNA-binding; Myb-like DNA-binding domain
    pfam15784
    Location:152 → 241
    GPS2_interact; G-protein pathway suppressor 2-interacting domain
    pfam16001
    Location:703 → 908
    DUF4775; Domain of unknown function (DUF4775)

  3. XM_040687330.2 → XP_040543264.1  nuclear receptor corepressor 1 isoform X4

    UniProtKB/TrEMBL
    A0A8V1AKD2
    Conserved Domains (4) summary
    cd00167
    Location:443 → 485
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
    pfam00249
    Location:632 → 675
    Myb_DNA-binding; Myb-like DNA-binding domain
    pfam15784
    Location:152 → 241
    GPS2_interact; G-protein pathway suppressor 2-interacting domain
    pfam16001
    Location:703 → 908
    DUF4775; Domain of unknown function (DUF4775)

  4. XM_040687328.2 → XP_040543262.1  nuclear receptor corepressor 1 isoform X2

    UniProtKB/TrEMBL
    A0A8V1AKD2
    Conserved Domains (4) summary
    cd00167
    Location:443 → 485
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
    pfam00249
    Location:632 → 675
    Myb_DNA-binding; Myb-like DNA-binding domain
    pfam15784
    Location:152 → 241
    GPS2_interact; G-protein pathway suppressor 2-interacting domain
    pfam16001
    Location:703 → 908
    DUF4775; Domain of unknown function (DUF4775)

  5. XM_040687329.2 → XP_040543263.1  nuclear receptor corepressor 1 isoform X3

    UniProtKB/TrEMBL
    A0A8V1AKD2
    Conserved Domains (4) summary
    cd00167
    Location:443 → 485
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
    pfam00249
    Location:632 → 675
    Myb_DNA-binding; Myb-like DNA-binding domain
    pfam15784
    Location:152 → 241
    GPS2_interact; G-protein pathway suppressor 2-interacting domain
    pfam16001
    Location:703 → 908
    DUF4775; Domain of unknown function (DUF4775)

  6. XM_040687324.2 → XP_040543258.1  nuclear receptor corepressor 1 isoform X1

    UniProtKB/TrEMBL
    A0A8V1AKD2
    Conserved Domains (4) summary
    cd00167
    Location:443 → 485
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
    pfam00249
    Location:632 → 675
    Myb_DNA-binding; Myb-like DNA-binding domain
    pfam15784
    Location:152 → 241
    GPS2_interact; G-protein pathway suppressor 2-interacting domain
    pfam16001
    Location:703 → 908
    DUF4775; Domain of unknown function (DUF4775)

  7. XM_046930289.1 → XP_046786245.1  nuclear receptor corepressor 1 isoform X1

    UniProtKB/TrEMBL
    A0A8V1AKD2

  8. XM_040687331.2 → XP_040543265.1  nuclear receptor corepressor 1 isoform X5

    Conserved Domains (2) summary
    pfam00249
    Location:130 → 173
    Myb_DNA-binding; Myb-like DNA-binding domain
    pfam16001
    Location:201 → 406
    DUF4775; Domain of unknown function (DUF4775)
Nucleotide Protein Strain
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