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RFLNB refilin B [ Gallus gallus (chicken) ]

Gene ID: 417623, updated on 17-Aug-2024

Summary

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Symbol
RFLNBprovided by CGNC
Full Name
refilin Bprovided by CGNC
Primary source
CGNC:3637
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
FAM101B
Orthologs
human mouse all
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Genomic context

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See RFLNB in Genome Data Viewer
Location:
chromosome: 19
Exon count:
4
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 19 NC_052550.1 (7472382..7479019)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 19 NC_052591.1 (7209364..7216006)

Chromosome 19 - NC_052550.1Genomic Context describing neighboring genes Neighboring gene glyoxalase domain containing 4 Neighboring gene gem nuclear organelle associated protein 4 Neighboring gene family with sequence similarity 57 member A Neighboring gene VPS53 subunit of GARP complex Neighboring gene uncharacterized LOC107054807 Neighboring gene rabphilin 3A-like (without C2 domains) Neighboring gene double C2 domain beta Neighboring gene opsin, pineal

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables filamin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in actin filament bundle organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of bone mineralization involved in bone maturation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of chondrocyte development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in skeletal system morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in actin filament bundle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
refilin-B
Names
family with sequence similarity 101 member B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052550.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    7472382..7479019
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015296121.4 → XP_015151607.2  refilin-B isoform X2

  2. XM_415867.8 → XP_415867.3  refilin-B isoform X1

    UniProtKB/TrEMBL
    E1BVJ1
    Conserved Domains (1) summary
    pfam15068
    Location:1 → 204
    FAM101; FAM101 family

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052591.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    7209364..7216006
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040687421.2 → XP_040543355.1  refilin-B isoform X2

  2. XM_040687420.2 → XP_040543354.1  refilin-B isoform X1

    Conserved Domains (1) summary
    pfam15068
    Location:1 → 204
    FAM101; FAM101 family
Nucleotide Protein
Heading Accession and Version

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