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IFT20 intraflagellar transport 20 [ Gallus gallus (chicken) ]

Gene ID: 417671, updated on 17-Aug-2024

Summary

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Symbol
IFT20provided by CGNC
Full Name
intraflagellar transport 20provided by CGNC
Primary source
CGNC:4256
See related
Ensembl:ENSGALG00010029567
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See IFT20 in Genome Data Viewer
Location:
chromosome: 19
Exon count:
4
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 19 NC_052550.1 (9786328..9788477, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 19 NC_052591.1 (9523999..9526153, complement)

Chromosome 19 - NC_052550.1Genomic Context describing neighboring genes Neighboring gene nemo like kinase Neighboring gene transmembrane protein 97 Neighboring gene TNF alpha induced protein 1 Neighboring gene small G protein signaling modulator 2 Neighboring gene translation initiation factor IF-2-like Neighboring gene microRNA 1592

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in centrosome localization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intraciliary transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein localization to cilium IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in centrosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cilium IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of intraciliary transport particle B IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
intraflagellar transport protein 20 homolog
Names
intraflagellar transport 20 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052550.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    9786328..9788477 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_415917.8 → XP_415917.1  intraflagellar transport protein 20 homolog isoform X2

    See identical proteins and their annotated locations for XP_415917.1

    UniProtKB/TrEMBL
    A0A1L1RUE2
    Conserved Domains (1) summary
    pfam14931
    Location:11 → 119
    IFT20; Intraflagellar transport complex B, subunit 20

  2. XM_015295867.4 → XP_015151353.1  intraflagellar transport protein 20 homolog isoform X1

    UniProtKB/TrEMBL
    A0A8V1ADP5, A0A8V1AKU1
    Related
    ENSGALP00010044146.1, ENSGALT00010071456.1
    Conserved Domains (1) summary
    pfam14931
    Location:11 → 71
    IFT20; Intraflagellar transport complex B, subunit 20

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052591.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    9523999..9526153 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040687742.2 → XP_040543676.1  intraflagellar transport protein 20 homolog isoform X2

    Conserved Domains (1) summary
    pfam14931
    Location:11 → 119
    IFT20; Intraflagellar transport complex B, subunit 20

  2. XM_040687741.2 → XP_040543675.1  intraflagellar transport protein 20 homolog isoform X1

    UniProtKB/TrEMBL
    A0A8V1ADP5, A0A8V1AKU1
    Conserved Domains (1) summary
    pfam14931
    Location:11 → 71
    IFT20; Intraflagellar transport complex B, subunit 20
Nucleotide Protein Strain
Heading Accession and Version

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