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CEP290 centrosomal protein 290 [ Gallus gallus (chicken) ]

Gene ID: 417887, updated on 17-Aug-2024

Summary

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Symbol
CEP290provided by CGNC
Full Name
centrosomal protein 290provided by CGNC
Primary source
CGNC:8490
See related
Ensembl:ENSGALG00010011407
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See CEP290 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
56
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 1 NC_052532.1 (42856289..42906945, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 1 NC_052573.1 (43198225..43248977, complement)

Chromosome 1 - NC_052532.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107052879 Neighboring gene C12orf50 homolog Neighboring gene C12orf29 homolog Neighboring gene transmembrane and tetratricopeptide repeat containing 3 Neighboring gene KIT ligand Neighboring gene uncharacterized LOC112533343

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in camera-type eye development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in kidney development IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
centrosomal protein of 290 kDa; LOW QUALITY PROTEIN: centrosomal protein of 290 kDa
Names
centrosomal protein 290kDa

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052532.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    42856289..42906945 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040671177.2 → XP_040527111.1  centrosomal protein of 290 kDa isoform X2

    UniProtKB/TrEMBL
    A0A8V0YD03
    Conserved Domains (2) summary
    COG1196
    Location:100 → 465
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    TIGR02168
    Location:1275 → 1991
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  2. XM_040671180.2 → XP_040527114.1  centrosomal protein of 290 kDa isoform X2

    UniProtKB/TrEMBL
    A0A8V0YD03
    Conserved Domains (2) summary
    COG1196
    Location:100 → 465
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    TIGR02168
    Location:1275 → 1991
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  3. XM_004937603.5 → XP_004937660.2  centrosomal protein of 290 kDa isoform X1

    UniProtKB/TrEMBL
    A0A8V0Y986, A0A8V0YD03
    Related
    ENSGALP00010015535.1, ENSGALT00010027281.1
    Conserved Domains (2) summary
    COG1196
    Location:1722 → 2453
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    TIGR02168
    Location:1275 → 1991
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  4. XM_040671196.2 → XP_040527130.1  centrosomal protein of 290 kDa isoform X2

    UniProtKB/TrEMBL
    A0A8V0YD03
    Conserved Domains (2) summary
    COG1196
    Location:100 → 465
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    TIGR02168
    Location:1275 → 1991
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  5. XM_040671188.2 → XP_040527122.1  centrosomal protein of 290 kDa isoform X2

    UniProtKB/TrEMBL
    A0A8V0YD03
    Conserved Domains (2) summary
    COG1196
    Location:100 → 465
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    TIGR02168
    Location:1275 → 1991
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  6. XM_040671227.2 → XP_040527161.1  centrosomal protein of 290 kDa isoform X3

    Conserved Domains (1) summary
    TIGR02168
    Location:693 → 1409
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052573.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    43198225..43248977 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040662292.2 → XP_040518226.1  LOW QUALITY PROTEIN: centrosomal protein of 290 kDa isoform X1

    UniProtKB/TrEMBL
    A0A8V0YD03
    Conserved Domains (2) summary
    COG1196
    Location:1722 → 2453
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    TIGR02168
    Location:1275 → 1991
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
Nucleotide Protein Strain
Heading Accession and Version

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