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KDM7A lysine demethylase 7A [ Gallus gallus (chicken) ]

Gene ID: 418110, updated on 17-Aug-2024

Summary

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Symbol
KDM7Aprovided by CGNC
Full Name
lysine demethylase 7Aprovided by CGNC
Primary source
CGNC:9733
See related
Ensembl:ENSGALG00010013316
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
JHDM1D
Orthologs
human mouse all
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Genomic context

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See KDM7A in Genome Data Viewer
Location:
chromosome: 1
Exon count:
21
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 1 NC_052532.1 (56717357..56776605, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 1 NC_052573.1 (57018214..57077430, complement)

Chromosome 1 - NC_052532.1Genomic Context describing neighboring genes Neighboring gene poly [ADP-ribose] polymerase 12-like Neighboring gene cystine/glutamate transporter-like Neighboring gene solute carrier family 37 member 3 Neighboring gene RAB19, member RAS oncogene family Neighboring gene makorin ring finger protein 4, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables histone demethylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coregulator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein demethylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lysine-specific demethylase 7A
Names
jumonji C domain containing histone demethylase 1 homolog D
lysine (K)-specific demethylase 7A
XP_015142945.2
XP_015142953.2
XP_040516793.1
XP_040516794.1
XP_040516795.1
XP_040516796.1
XP_046764893.1
XP_046766074.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052532.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    56717357..56776605 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015287467.4 → XP_015142953.2  lysine-specific demethylase 7A isoform X2

    UniProtKB/TrEMBL
    A0A8V0YJ28
    Related
    ENSGALP00010018824.1, ENSGALT00010032034.1
    Conserved Domains (3) summary
    PRK07403
    Location:132 → 229
    PRK07403; type I glyceraldehyde-3-phosphate dehydrogenase
    smart00558
    Location:208 → 271
    JmjC; A domain family that is part of the cupin metalloenzyme superfamily
    cd15640
    Location:13 → 62
    PHD_KDM7; PHD finger found in lysine-specific demethylase 7 (KDM7)

  2. XM_015287459.4 → XP_015142945.2  lysine-specific demethylase 7A isoform X1

    Conserved Domains (3) summary
    PRK07403
    Location:132 → 229
    PRK07403; type I glyceraldehyde-3-phosphate dehydrogenase
    smart00558
    Location:208 → 271
    JmjC; A domain family that is part of the cupin metalloenzyme superfamily
    cd15640
    Location:13 → 62
    PHD_KDM7; PHD finger found in lysine-specific demethylase 7 (KDM7)

  3. XM_046910118.1 → XP_046766074.1  lysine-specific demethylase 7A isoform X3

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052573.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    57018214..57077430 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040660862.2 → XP_040516796.1  lysine-specific demethylase 7A isoform X2

    UniProtKB/TrEMBL
    A0A8V0YJ28
    Conserved Domains (3) summary
    PRK07403
    Location:132 → 229
    PRK07403; type I glyceraldehyde-3-phosphate dehydrogenase
    smart00558
    Location:208 → 271
    JmjC; A domain family that is part of the cupin metalloenzyme superfamily
    cd15640
    Location:13 → 62
    PHD_KDM7; PHD finger found in lysine-specific demethylase 7 (KDM7)

  2. XM_040660861.2 → XP_040516795.1  lysine-specific demethylase 7A isoform X1

    Conserved Domains (3) summary
    PRK07403
    Location:132 → 229
    PRK07403; type I glyceraldehyde-3-phosphate dehydrogenase
    smart00558
    Location:208 → 271
    JmjC; A domain family that is part of the cupin metalloenzyme superfamily
    cd15640
    Location:13 → 62
    PHD_KDM7; PHD finger found in lysine-specific demethylase 7 (KDM7)

  3. XM_040660860.2 → XP_040516794.1  lysine-specific demethylase 7A isoform X5

    Conserved Domains (3) summary
    PRK07403
    Location:134 → 231
    PRK07403; type I glyceraldehyde-3-phosphate dehydrogenase
    smart00558
    Location:210 → 273
    JmjC; A domain family that is part of the cupin metalloenzyme superfamily
    cl22851
    Location:34 → 64
    PHD_SF; PHD finger superfamily

  4. XM_040660859.2 → XP_040516793.1  lysine-specific demethylase 7A isoform X4

    Conserved Domains (3) summary
    PRK07403
    Location:134 → 231
    PRK07403; type I glyceraldehyde-3-phosphate dehydrogenase
    smart00558
    Location:210 → 273
    JmjC; A domain family that is part of the cupin metalloenzyme superfamily
    cl22851
    Location:34 → 64
    PHD_SF; PHD finger superfamily

  5. XM_046908937.1 → XP_046764893.1  lysine-specific demethylase 7A isoform X3

Nucleotide Protein
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