U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

CAPRIN2 caprin family member 2 [ Gallus gallus (chicken) ]

Gene ID: 418141, updated on 3-Dec-2024

Summary

Go to the top of the page Help
Symbol
CAPRIN2provided by CGNC
Full Name
caprin family member 2provided by CGNC
Primary source
CGNC:9802
See related
Ensembl:ENSGALG00010012072
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
C1QDC1
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See CAPRIN2 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
21
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 1 NC_052532.1 (59631237..59663199)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 1 NC_052573.1 (59959504..59991507)

Chromosome 1 - NC_052532.1Genomic Context describing neighboring genes Neighboring gene family with sequence similarity 60 member A Neighboring gene uncharacterized LOC101752247 Neighboring gene microRNA 1593 Neighboring gene importin 8 Neighboring gene uncharacterized LOC121107096

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables signaling receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of canonical Wnt signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
caprin-2
Names
C1q domain containing 1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052532.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    59631237..59663199
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046901278.1 → XP_046757234.1  caprin-2 isoform X1

    UniProtKB/TrEMBL
    A0A8V0Y7P0, A0A8V0YDW5

  2. XM_046901307.1 → XP_046757263.1  caprin-2 isoform X6

  3. XM_025141431.3 → XP_024997199.1  caprin-2 isoform X2

    UniProtKB/TrEMBL
    A0A8V0YDW5
    Conserved Domains (5) summary
    PTZ00121
    Location:269 → 551
    PTZ00121; MAEBL; Provisional
    pfam00386
    Location:1046 → 1171
    C1q; C1q domain
    pfam12287
    Location:619 → 982
    Caprin-1_C; Cytoplasmic activation/proliferation-associated protein-1 C term
    pfam13870
    Location:69 → 162
    DUF4201; Domain of unknown function (DUF4201)
    pfam18293
    Location:143 → 258
    Caprin-1_dimer; Caprin-1 dimerization domain

  4. XM_046901300.1 → XP_046757256.1  caprin-2 isoform X5

  5. XM_046901305.1 → XP_046757261.1  caprin-2 isoform X6

  6. XM_046901273.1 → XP_046757229.1  caprin-2 isoform X1

    UniProtKB/TrEMBL
    A0A8V0Y7P0, A0A8V0YDW5

  7. XM_046901282.1 → XP_046757238.1  caprin-2 isoform X2

    UniProtKB/TrEMBL
    A0A8V0YDW5

  8. XM_025141435.3 → XP_024997203.1  caprin-2 isoform X5

    Conserved Domains (4) summary
    pfam00386
    Location:766 → 891
    C1q; C1q domain
    pfam12287
    Location:338 → 702
    Caprin-1_C; Cytoplasmic activation/proliferation-associated protein-1 C term
    pfam13870
    Location:69 → 162
    DUF4201; Domain of unknown function (DUF4201)
    pfam18293
    Location:143 → 258
    Caprin-1_dimer; Caprin-1 dimerization domain

  9. XM_046901304.1 → XP_046757260.1  caprin-2 isoform X6

  10. XM_025141430.3 → XP_024997198.2  caprin-2 isoform X3

    UniProtKB/TrEMBL
    A0A8V0YDW5

  11. XM_046901295.1 → XP_046757251.1  caprin-2 isoform X4

    UniProtKB/TrEMBL
    A0A8V0YDW5, A0A8V0YDX0
    Related
    ENSGALP00010016688.1, ENSGALT00010028929.1

  12. XM_040649278.2 → XP_040505212.2  caprin-2 isoform X8

  13. XM_046901297.1 → XP_046757253.1  caprin-2 isoform X4

    UniProtKB/TrEMBL
    A0A8V0YDW5, A0A8V0YDX0

  14. XM_046901310.1 → XP_046757266.1  caprin-2 isoform X7

  15. XM_046901313.1 → XP_046757269.1  caprin-2 isoform X8

  16. XM_046901281.1 → XP_046757237.1  caprin-2 isoform X1

    UniProtKB/TrEMBL
    A0A8V0Y7P0, A0A8V0YDW5
    Related
    ENSGALP00010016686.1, ENSGALT00010028927.1

  17. XM_046901285.1 → XP_046757241.1  caprin-2 isoform X2

    UniProtKB/TrEMBL
    A0A8V0YDW5

  18. XM_046901302.1 → XP_046757258.1  caprin-2 isoform X5

  19. XM_046901308.1 → XP_046757264.1  caprin-2 isoform X6

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052573.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    59959504..59991507
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046908727.1 → XP_046764683.1  caprin-2 isoform X1

    UniProtKB/TrEMBL
    A0A8V0Y7P0, A0A8V0YDW5

  2. XM_046908738.1 → XP_046764694.1  caprin-2 isoform X6

  3. XM_040658729.2 → XP_040514663.1  caprin-2 isoform X2

    UniProtKB/TrEMBL
    A0A8V0YDW5
    Conserved Domains (5) summary
    PTZ00121
    Location:269 → 551
    PTZ00121; MAEBL; Provisional
    pfam00386
    Location:1046 → 1171
    C1q; C1q domain
    pfam12287
    Location:619 → 982
    Caprin-1_C; Cytoplasmic activation/proliferation-associated protein-1 C term
    pfam13870
    Location:69 → 162
    DUF4201; Domain of unknown function (DUF4201)
    pfam18293
    Location:143 → 258
    Caprin-1_dimer; Caprin-1 dimerization domain

  4. XM_046908733.1 → XP_046764689.1  caprin-2 isoform X5

  5. XM_046908736.1 → XP_046764692.1  caprin-2 isoform X6

  6. XM_046908726.1 → XP_046764682.1  caprin-2 isoform X1

    UniProtKB/TrEMBL
    A0A8V0Y7P0, A0A8V0YDW5

  7. XM_046908729.1 → XP_046764685.1  caprin-2 isoform X2

    UniProtKB/TrEMBL
    A0A8V0YDW5

  8. XM_040658730.2 → XP_040514664.1  caprin-2 isoform X5

    Conserved Domains (4) summary
    pfam00386
    Location:766 → 891
    C1q; C1q domain
    pfam12287
    Location:338 → 702
    Caprin-1_C; Cytoplasmic activation/proliferation-associated protein-1 C term
    pfam13870
    Location:69 → 162
    DUF4201; Domain of unknown function (DUF4201)
    pfam18293
    Location:143 → 258
    Caprin-1_dimer; Caprin-1 dimerization domain

  9. XM_046908735.1 → XP_046764691.1  caprin-2 isoform X6

  10. XM_040658728.2 → XP_040514662.2  caprin-2 isoform X3

    UniProtKB/TrEMBL
    A0A8V0YDW5

  11. XM_046908731.1 → XP_046764687.1  caprin-2 isoform X4

    UniProtKB/TrEMBL
    A0A8V0YDW5, A0A8V0YDX0

  12. XM_040658731.2 → XP_040514665.2  caprin-2 isoform X8

  13. XM_046908732.1 → XP_046764688.1  caprin-2 isoform X4

    UniProtKB/TrEMBL
    A0A8V0YDW5, A0A8V0YDX0

  14. XM_046908739.1 → XP_046764695.1  caprin-2 isoform X7

  15. XM_046908740.1 → XP_046764696.1  caprin-2 isoform X8

  16. XM_046908728.1 → XP_046764684.1  caprin-2 isoform X1

    UniProtKB/TrEMBL
    A0A8V0Y7P0, A0A8V0YDW5

  17. XM_046908730.1 → XP_046764686.1  caprin-2 isoform X2

    UniProtKB/TrEMBL
    A0A8V0YDW5

  18. XM_046908734.1 → XP_046764690.1  caprin-2 isoform X5

  19. XM_046908737.1 → XP_046764693.1  caprin-2 isoform X6

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.