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DDX11 DEAD/H-box helicase 11 [ Gallus gallus (chicken) ]

Gene ID: 418144, updated on 3-Dec-2024

Summary

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Symbol
DDX11provided by CGNC
Full Name
DEAD/H-box helicase 11provided by CGNC
Primary source
CGNC:50682
See related
Ensembl:ENSGALG00010012138
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
DDX12
Orthologs
human mouse all
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Genomic context

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See DDX11 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
33
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 1 NC_052532.1 (59960716..59991936)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 1 NC_052573.1 (60288665..60319855)

Chromosome 1 - NC_052532.1Genomic Context describing neighboring genes Neighboring gene transmembrane and tetratricopeptide repeat containing 1 Neighboring gene uncharacterized LOC121109050 Neighboring gene ovochymase 1 Neighboring gene acrosin-binding protein like Neighboring gene ZFP2 zinc finger protein Neighboring gene WASH complex subunit 1 Neighboring gene IQ motif and Sec7 domain 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA duplex unwinding IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in establishment of sister chromatid cohesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nucleobase-containing compound metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable ATP-dependent DNA helicase DDX11; ATP-dependent DNA helicase DDX11
Names
DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11
DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 (CHL1-like helicase homolog, S. cerevisiae)
DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 12 (CHL1-like helicase homolog, S. cerevisiae)
XP_024997212.2
XP_024997215.2
XP_024997218.2
XP_040513832.1
XP_040513833.1
XP_040513834.1
XP_040513835.1
XP_040513836.1
XP_040513837.1
XP_040561332.1
XP_040561339.1
XP_046757273.1
XP_046757277.1
XP_046757278.1
XP_046757279.1
XP_046757287.1
XP_046757291.1
XP_046757292.1
XP_046757296.1
XP_046757300.1
XP_046764697.1
XP_046764698.1
XP_046764699.1
XP_046764700.1
XP_046764701.1
XP_046764702.1
XP_046764703.1
XP_046764704.1
XP_046764705.1
XP_416375.5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052532.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    59960716..59991936
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046901317.1 → XP_046757273.1  ATP-dependent DNA helicase DDX11 isoform X1

    UniProtKB/TrEMBL
    A0A8V0YGK0, A0A8V0YLC1

  2. XM_046901335.1 → XP_046757291.1  ATP-dependent DNA helicase DDX11 isoform X1

    UniProtKB/TrEMBL
    A0A8V0YGK0, A0A8V0YLC1

  3. XM_046901336.1 → XP_046757292.1  ATP-dependent DNA helicase DDX11 isoform X1

    UniProtKB/TrEMBL
    A0A8V0YGK0, A0A8V0YLC1

  4. XM_046901323.1 → XP_046757279.1  ATP-dependent DNA helicase DDX11 isoform X1

    UniProtKB/TrEMBL
    A0A8V0YGK0, A0A8V0YLC1

  5. XM_046901321.1 → XP_046757277.1  ATP-dependent DNA helicase DDX11 isoform X1

    UniProtKB/TrEMBL
    A0A8V0YGK0, A0A8V0YLC1

  6. XM_046901331.1 → XP_046757287.1  ATP-dependent DNA helicase DDX11 isoform X1

    UniProtKB/TrEMBL
    A0A8V0YGK0, A0A8V0YLC1

  7. XM_046901322.1 → XP_046757278.1  ATP-dependent DNA helicase DDX11 isoform X1

    UniProtKB/TrEMBL
    A0A8V0YGK0, A0A8V0YLC1

  8. XM_046901340.1 → XP_046757296.1  ATP-dependent DNA helicase DDX11 isoform X1

    UniProtKB/TrEMBL
    A0A8V0YGK0, A0A8V0YLC1

  9. XM_040705398.2 → XP_040561332.1  ATP-dependent DNA helicase DDX11 isoform X1

    UniProtKB/TrEMBL
    A0A8V0YGK0, A0A8V0YLC1
    Related
    ENSGALP00010016884.1, ENSGALT00010029127.1
    Conserved Domains (3) summary
    PTZ00121
    Location:72 → 341
    PTZ00121; MAEBL; Provisional
    TIGR00604
    Location:229 → 897
    rad3; DNA repair helicase (rad3)
    cl30285
    Location:29 → 104
    Csf4_U; CRISPR/Cas system-associated DinG family helicase Csf4

  10. XM_416375.8 → XP_416375.5  ATP-dependent DNA helicase DDX11 isoform X2

    UniProtKB/TrEMBL
    A0A8V0Y861, A0A8V0YGK0
    Related
    ENSGALP00010016883.1, ENSGALT00010029125.1
    Conserved Domains (3) summary
    PTZ00121
    Location:70 → 339
    PTZ00121; MAEBL; Provisional
    TIGR00604
    Location:227 → 895
    rad3; DNA repair helicase (rad3)
    cl30285
    Location:27 → 102
    Csf4_U; CRISPR/Cas system-associated DinG family helicase Csf4

  11. XM_046901344.1 → XP_046757300.1  ATP-dependent DNA helicase DDX11 isoform X3

    UniProtKB/TrEMBL
    A0A8V0YGK0

  12. XM_025141444.3 → XP_024997212.2  ATP-dependent DNA helicase DDX11 isoform X4

    UniProtKB/TrEMBL
    A0A8V0Y856
    Conserved Domains (2) summary
    PTZ00121
    Location:40 → 309
    PTZ00121; MAEBL; Provisional
    TIGR00604
    Location:197 → 865
    rad3; DNA repair helicase (rad3)

  13. XM_040705405.2 → XP_040561339.1  ATP-dependent DNA helicase DDX11 isoform X5

    UniProtKB/TrEMBL
    A0A8V0Y856
    Conserved Domains (1) summary
    TIGR00604
    Location:124 → 792
    rad3; DNA repair helicase (rad3)

  14. XM_025141450.3 → XP_024997218.2  ATP-dependent DNA helicase DDX11 isoform X7

    UniProtKB/TrEMBL
    A0A8V0Y856
    Conserved Domains (1) summary
    TIGR00604
    Location:68 → 736
    rad3; DNA repair helicase (rad3)

  15. XM_025141447.3 → XP_024997215.2  ATP-dependent DNA helicase DDX11 isoform X6

    UniProtKB/TrEMBL
    A0A8V0Y856
    Conserved Domains (1) summary
    TIGR00604
    Location:97 → 765
    rad3; DNA repair helicase (rad3)

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052573.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    60288665..60319855
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046908741.1 → XP_046764697.1  ATP-dependent DNA helicase DDX11 isoform X1

    UniProtKB/TrEMBL
    A0A8V0YGK0

  2. XM_046908746.1 → XP_046764702.1  ATP-dependent DNA helicase DDX11 isoform X1

    UniProtKB/TrEMBL
    A0A8V0YGK0

  3. XM_046908747.1 → XP_046764703.1  ATP-dependent DNA helicase DDX11 isoform X1

    UniProtKB/TrEMBL
    A0A8V0YGK0

  4. XM_046908744.1 → XP_046764700.1  ATP-dependent DNA helicase DDX11 isoform X1

    UniProtKB/TrEMBL
    A0A8V0YGK0

  5. XM_046908742.1 → XP_046764698.1  ATP-dependent DNA helicase DDX11 isoform X1

    UniProtKB/TrEMBL
    A0A8V0YGK0

  6. XM_046908745.1 → XP_046764701.1  ATP-dependent DNA helicase DDX11 isoform X1

    UniProtKB/TrEMBL
    A0A8V0YGK0

  7. XM_046908743.1 → XP_046764699.1  ATP-dependent DNA helicase DDX11 isoform X1

    UniProtKB/TrEMBL
    A0A8V0YGK0

  8. XM_046908748.1 → XP_046764704.1  ATP-dependent DNA helicase DDX11 isoform X1

    UniProtKB/TrEMBL
    A0A8V0YGK0

  9. XM_040657898.2 → XP_040513832.1  ATP-dependent DNA helicase DDX11 isoform X1

    UniProtKB/TrEMBL
    A0A8V0YGK0
    Conserved Domains (3) summary
    PTZ00121
    Location:72 → 341
    PTZ00121; MAEBL; Provisional
    TIGR00604
    Location:229 → 897
    rad3; DNA repair helicase (rad3)
    cl30285
    Location:29 → 70
    Csf4_U; CRISPR/Cas system-associated DinG family helicase Csf4

  10. XM_040657899.2 → XP_040513833.1  ATP-dependent DNA helicase DDX11 isoform X2

    UniProtKB/TrEMBL
    A0A8V0YGK0
    Conserved Domains (3) summary
    PTZ00121
    Location:70 → 339
    PTZ00121; MAEBL; Provisional
    TIGR00604
    Location:227 → 895
    rad3; DNA repair helicase (rad3)
    cl30285
    Location:27 → 68
    Csf4_U; CRISPR/Cas system-associated DinG family helicase Csf4

  11. XM_046908749.1 → XP_046764705.1  ATP-dependent DNA helicase DDX11 isoform X3

    UniProtKB/TrEMBL
    A0A8V0YGK0

  12. XM_040657900.2 → XP_040513834.1  ATP-dependent DNA helicase DDX11 isoform X4

    UniProtKB/TrEMBL
    A0A8V0Y856
    Conserved Domains (2) summary
    PTZ00121
    Location:40 → 309
    PTZ00121; MAEBL; Provisional
    TIGR00604
    Location:197 → 865
    rad3; DNA repair helicase (rad3)

  13. XM_040657901.1 → XP_040513835.1  ATP-dependent DNA helicase DDX11 isoform X5

    UniProtKB/TrEMBL
    A0A8V0Y856
    Conserved Domains (1) summary
    TIGR00604
    Location:124 → 792
    rad3; DNA repair helicase (rad3)

  14. XM_040657903.1 → XP_040513837.1  ATP-dependent DNA helicase DDX11 isoform X7

    UniProtKB/TrEMBL
    A0A8V0Y856
    Conserved Domains (1) summary
    TIGR00604
    Location:68 → 736
    rad3; DNA repair helicase (rad3)

  15. XM_040657902.2 → XP_040513836.1  ATP-dependent DNA helicase DDX11 isoform X6

    UniProtKB/TrEMBL
    A0A8V0Y856
    Conserved Domains (1) summary
    TIGR00604
    Location:97 → 765
    rad3; DNA repair helicase (rad3)
Nucleotide Protein Strain
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