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NUP50 nucleoporin 50 [ Gallus gallus (chicken) ]

Gene ID: 418240, updated on 3-Dec-2024

Summary

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Symbol
NUP50provided by CGNC
Full Name
nucleoporin 50provided by CGNC
Primary source
CGNC:10599
See related
Ensembl:ENSGALG00010012043
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See NUP50 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
8
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 1 NC_052532.1 (70285936..70302000)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 1 NC_052573.1 (70599314..70615378)

Chromosome 1 - NC_052532.1Genomic Context describing neighboring genes Neighboring gene PHD finger protein 21B Neighboring gene uncharacterized LOC107053999 Neighboring gene uncharacterized LOC112530109 Neighboring gene KIAA0930 Neighboring gene uroplakin 3A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in protein import into nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of nuclear pore IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nuclear pore complex protein Nup50
Names
nucleoporin 50kDa

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001012541.2 → NP_001012559.1  nuclear pore complex protein Nup50

    See identical proteins and their annotated locations for NP_001012559.1

    Status: PROVISIONAL

    Source sequence(s)
    JAENSK010000012
    UniProtKB/TrEMBL
    A0A1D5PBT3, A0A1D5PLB9, A0A8V0YFU8, Q5F473
    Related
    ENSGALP00010016608.1, ENSGALT00010028849.1
    Conserved Domains (2) summary
    cd13170
    Location:351 → 466
    RanBD_NUP50; Nucleoporin 50 Ran-binding domain
    pfam08911
    Location:3 → 64
    NUP50; NUP50 (Nucleoporin 50 kDa)

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052532.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    70285936..70302000
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046939634.1 → XP_046795590.1  nuclear pore complex protein Nup50 isoform X1

    UniProtKB/TrEMBL
    A0A1D5PBT3, A0A1D5PLB9, A0A8V0YFU8, Q5F473
    Related
    ENSGALP00010016599.1, ENSGALT00010028840.1

  2. XM_046939641.1 → XP_046795597.1  nuclear pore complex protein Nup50 isoform X1

    UniProtKB/TrEMBL
    A0A1D5PBT3, A0A1D5PLB9, A0A8V0YFU8, Q5F473

  3. XM_046939640.1 → XP_046795596.1  nuclear pore complex protein Nup50 isoform X1

    UniProtKB/TrEMBL
    A0A1D5PBT3, A0A1D5PLB9, A0A8V0YFU8, Q5F473

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052573.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    70599314..70615378
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046907733.1 → XP_046763689.1  nuclear pore complex protein Nup50 isoform X1

    UniProtKB/TrEMBL
    A0A1D5PBT3, A0A1D5PLB9, A0A8V0YFU8, Q5F473

  2. XM_046907735.1 → XP_046763691.1  nuclear pore complex protein Nup50 isoform X1

    UniProtKB/TrEMBL
    A0A1D5PBT3, A0A1D5PLB9, A0A8V0YFU8, Q5F473

  3. XM_046907734.1 → XP_046763690.1  nuclear pore complex protein Nup50 isoform X1

    UniProtKB/TrEMBL
    A0A1D5PBT3, A0A1D5PLB9, A0A8V0YFU8, Q5F473
Nucleotide Protein Strain
Heading Accession and Version

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