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PHLDB2 pleckstrin homology like domain family B member 2 [ Gallus gallus (chicken) ]

Gene ID: 418418, updated on 3-Dec-2024

Summary

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Symbol
PHLDB2provided by CGNC
Full Name
pleckstrin homology like domain family B member 2provided by CGNC
Primary source
CGNC:50761
See related
Ensembl:ENSGALG00010005114
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See PHLDB2 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
30
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 1 NC_052532.1 (88648980..88762161)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 1 NC_052573.1 (88699911..88812914)

Chromosome 1 - NC_052532.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107055009 Neighboring gene phosphatidylinositol specific phospholipase C X domain containing 2 Neighboring gene uncharacterized LOC121110249 Neighboring gene microRNA 7446 Neighboring gene abhydrolase domain containing 10 Neighboring gene uncharacterized LOC124417252 Neighboring gene transgelin 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in regulation of microtubule cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in basal cortex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pleckstrin homology-like domain family B member 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052532.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    88648980..88762161
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040667005.2 → XP_040522939.1  pleckstrin homology-like domain family B member 2 isoform X1

    UniProtKB/TrEMBL
    A0A8V0XJ50
    Conserved Domains (3) summary
    COG1196
    Location:589 → 826
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cd14673
    Location:1221 → 1325
    PH_PHLDB1_2; Pleckstrin homology-like domain-containing family B member 2 pleckstrin homology (PH) domain
    pfam17380
    Location:1116 → 1184
    DUF5401; Family of unknown function (DUF5401)

  2. XM_040667026.2 → XP_040522960.1  pleckstrin homology-like domain family B member 2 isoform X4

    UniProtKB/TrEMBL
    A0A8V0XJ50, A0A8V0XRJ8
    Related
    ENSGALP00010006713.1, ENSGALT00010012026.1
    Conserved Domains (3) summary
    COG1196
    Location:589 → 793
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cd14673
    Location:1178 → 1282
    PH_PHLDB1_2; Pleckstrin homology-like domain-containing family B member 2 pleckstrin homology (PH) domain
    pfam17380
    Location:1073 → 1141
    DUF5401; Family of unknown function (DUF5401)

  3. XM_046901523.1 → XP_046757479.1  pleckstrin homology-like domain family B member 2 isoform X1

    UniProtKB/TrEMBL
    A0A8V0XJ50

  4. XM_040667011.2 → XP_040522945.1  pleckstrin homology-like domain family B member 2 isoform X5

    UniProtKB/TrEMBL
    A0A8V0XJ50
    Conserved Domains (3) summary
    COG1196
    Location:588 → 825
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cd14673
    Location:1220 → 1324
    PH_PHLDB1_2; Pleckstrin homology-like domain-containing family B member 2 pleckstrin homology (PH) domain
    pfam02463
    Location:604 → 1183
    SMC_N; RecF/RecN/SMC N terminal domain

  5. XM_040667009.2 → XP_040522943.1  pleckstrin homology-like domain family B member 2 isoform X1

    UniProtKB/TrEMBL
    A0A8V0XJ50
    Conserved Domains (3) summary
    COG1196
    Location:589 → 826
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cd14673
    Location:1221 → 1325
    PH_PHLDB1_2; Pleckstrin homology-like domain-containing family B member 2 pleckstrin homology (PH) domain
    pfam17380
    Location:1116 → 1184
    DUF5401; Family of unknown function (DUF5401)

  6. XM_046901545.1 → XP_046757501.1  pleckstrin homology-like domain family B member 2 isoform X3

    UniProtKB/TrEMBL
    A0A8V0XJ50

  7. XM_046901535.1 → XP_046757491.1  pleckstrin homology-like domain family B member 2 isoform X1

    UniProtKB/TrEMBL
    A0A8V0XJ50

  8. XM_040667000.2 → XP_040522934.1  pleckstrin homology-like domain family B member 2 isoform X1

    UniProtKB/TrEMBL
    A0A8V0XJ50
    Conserved Domains (3) summary
    COG1196
    Location:589 → 826
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cd14673
    Location:1221 → 1325
    PH_PHLDB1_2; Pleckstrin homology-like domain-containing family B member 2 pleckstrin homology (PH) domain
    pfam17380
    Location:1116 → 1184
    DUF5401; Family of unknown function (DUF5401)

  9. XM_040666989.2 → XP_040522923.1  pleckstrin homology-like domain family B member 2 isoform X1

    UniProtKB/TrEMBL
    A0A8V0XJ50
    Conserved Domains (3) summary
    COG1196
    Location:589 → 826
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cd14673
    Location:1221 → 1325
    PH_PHLDB1_2; Pleckstrin homology-like domain-containing family B member 2 pleckstrin homology (PH) domain
    pfam17380
    Location:1116 → 1184
    DUF5401; Family of unknown function (DUF5401)

  10. XM_046901541.1 → XP_046757497.1  pleckstrin homology-like domain family B member 2 isoform X3

    UniProtKB/TrEMBL
    A0A8V0XJ50

  11. XM_046901527.1 → XP_046757483.1  pleckstrin homology-like domain family B member 2 isoform X1

    UniProtKB/TrEMBL
    A0A8V0XJ50

  12. XM_046901517.1 → XP_046757473.1  pleckstrin homology-like domain family B member 2 isoform X1

    UniProtKB/TrEMBL
    A0A8V0XJ50

  13. XM_046901562.1 → XP_046757518.1  pleckstrin homology-like domain family B member 2 isoform X6

    UniProtKB/TrEMBL
    A0A8V0XJ50
    Related
    ENSGALP00010006721.1, ENSGALT00010012045.1

  14. XM_046901567.1 → XP_046757523.1  pleckstrin homology-like domain family B member 2 isoform X8

    UniProtKB/TrEMBL
    A0A8V0XJ50, E1C7W8
    Related
    ENSGALP00010006724.1, ENSGALT00010012052.1

  15. XM_046901563.1 → XP_046757519.1  pleckstrin homology-like domain family B member 2 isoform X7

    UniProtKB/TrEMBL
    A0A3Q3AYE3, A0A8V0XJ50
    Related
    ENSGALP00010006718.1, ENSGALT00010012034.1

  16. XM_046901569.1 → XP_046757525.1  pleckstrin homology-like domain family B member 2 isoform X9

    UniProtKB/TrEMBL
    A0A8V0XJ50

  17. XM_040667019.2 → XP_040522953.1  pleckstrin homology-like domain family B member 2 isoform X2

    UniProtKB/TrEMBL
    A0A8V0XJ50, A0A8V0XPF2
    Related
    ENSGALP00010006715.1, ENSGALT00010012029.1
    Conserved Domains (3) summary
    COG1196
    Location:577 → 814
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cd14673
    Location:1209 → 1313
    PH_PHLDB1_2; Pleckstrin homology-like domain-containing family B member 2 pleckstrin homology (PH) domain
    pfam02463
    Location:593 → 1172
    SMC_N; RecF/RecN/SMC N terminal domain

  18. XM_046901576.1 → XP_046757532.1  pleckstrin homology-like domain family B member 2 isoform X11

  19. XM_046901578.1 → XP_046757534.1  pleckstrin homology-like domain family B member 2 isoform X11

  20. XM_046901572.1 → XP_046757528.1  pleckstrin homology-like domain family B member 2 isoform X10

  21. XM_046901581.1 → XP_046757537.1  pleckstrin homology-like domain family B member 2 isoform X11

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052573.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    88699911..88812914
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040662066.2 → XP_040518000.1  pleckstrin homology-like domain family B member 2 isoform X1

    UniProtKB/TrEMBL
    A0A8V0XJ50
    Conserved Domains (3) summary
    COG1196
    Location:590 → 827
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cd14673
    Location:1222 → 1326
    PH_PHLDB1_2; Pleckstrin homology-like domain-containing family B member 2 pleckstrin homology (PH) domain
    pfam02463
    Location:606 → 1185
    SMC_N; RecF/RecN/SMC N terminal domain

  2. XM_040662071.2 → XP_040518005.1  pleckstrin homology-like domain family B member 2 isoform X4

    UniProtKB/TrEMBL
    A0A8V0XJ50
    Conserved Domains (3) summary
    COG1196
    Location:590 → 794
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cd14673
    Location:1179 → 1283
    PH_PHLDB1_2; Pleckstrin homology-like domain-containing family B member 2 pleckstrin homology (PH) domain
    pfam17380
    Location:1074 → 1142
    DUF5401; Family of unknown function (DUF5401)

  3. XM_046909050.1 → XP_046765006.1  pleckstrin homology-like domain family B member 2 isoform X1

    UniProtKB/TrEMBL
    A0A8V0XJ50

  4. XM_040662068.2 → XP_040518002.2  pleckstrin homology-like domain family B member 2 isoform X12

    UniProtKB/TrEMBL
    A0A8V0XJ50

  5. XM_046909054.1 → XP_046765010.1  pleckstrin homology-like domain family B member 2 isoform X14

    UniProtKB/TrEMBL
    A0A8V0XJ50

  6. XM_046909056.1 → XP_046765012.1  pleckstrin homology-like domain family B member 2 isoform X16

    UniProtKB/TrEMBL
    A0A8V0XF15

  7. XM_046909053.1 → XP_046765009.1  pleckstrin homology-like domain family B member 2 isoform X13

    UniProtKB/TrEMBL
    A0A8V0XJ50

  8. XM_046909055.1 → XP_046765011.1  pleckstrin homology-like domain family B member 2 isoform X15

    UniProtKB/TrEMBL
    A0A8V0XJ50

  9. XM_046909057.1 → XP_046765013.1  pleckstrin homology-like domain family B member 2 isoform X17

    UniProtKB/TrEMBL
    A0A8V0XF15

  10. XM_040662065.2 → XP_040517999.1  pleckstrin homology-like domain family B member 2 isoform X1

    UniProtKB/TrEMBL
    A0A8V0XJ50
    Conserved Domains (3) summary
    COG1196
    Location:590 → 827
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cd14673
    Location:1222 → 1326
    PH_PHLDB1_2; Pleckstrin homology-like domain-containing family B member 2 pleckstrin homology (PH) domain
    pfam02463
    Location:606 → 1185
    SMC_N; RecF/RecN/SMC N terminal domain

  11. XM_046909051.1 → XP_046765007.1  pleckstrin homology-like domain family B member 2 isoform X1

    UniProtKB/TrEMBL
    A0A8V0XJ50

  12. XM_040662064.2 → XP_040517998.1  pleckstrin homology-like domain family B member 2 isoform X1

    UniProtKB/TrEMBL
    A0A8V0XJ50
    Conserved Domains (3) summary
    COG1196
    Location:590 → 827
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cd14673
    Location:1222 → 1326
    PH_PHLDB1_2; Pleckstrin homology-like domain-containing family B member 2 pleckstrin homology (PH) domain
    pfam02463
    Location:606 → 1185
    SMC_N; RecF/RecN/SMC N terminal domain

  13. XM_046909052.1 → XP_046765008.1  pleckstrin homology-like domain family B member 2 isoform X3

    UniProtKB/TrEMBL
    A0A8V0XJ50

  14. XM_046909049.1 → XP_046765005.1  pleckstrin homology-like domain family B member 2 isoform X1

    UniProtKB/TrEMBL
    A0A8V0XJ50

  15. XM_046909048.1 → XP_046765004.1  pleckstrin homology-like domain family B member 2 isoform X1

    UniProtKB/TrEMBL
    A0A8V0XJ50

  16. XM_040662069.2 → XP_040518003.1  pleckstrin homology-like domain family B member 2 isoform X2

    UniProtKB/TrEMBL
    A0A8V0XJ50
    Conserved Domains (3) summary
    COG1196
    Location:578 → 815
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cd14673
    Location:1210 → 1314
    PH_PHLDB1_2; Pleckstrin homology-like domain-containing family B member 2 pleckstrin homology (PH) domain
    pfam02463
    Location:594 → 1173
    SMC_N; RecF/RecN/SMC N terminal domain
Nucleotide Protein Strain
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