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LCA5L lebercilin LCA5 like [ Gallus gallus (chicken) ]

Gene ID: 418522, updated on 3-Dec-2024

Summary

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Official Symbol
LCA5Lprovided by CGNC
Official Full Name
lebercilin LCA5 likeprovided by CGNC
Primary source
CGNC:12054
See related
Ensembl:ENSGALG00010013449
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
C21orf13
Orthologs
human mouse all
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Genomic context

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See LCA5L in Genome Data Viewer
Location:
chromosome: 1
Exon count:
8
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 1 NC_052532.1 (108091993..108107082, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 1 NC_052573.1 (108181678..108196763, complement)

Chromosome 1 - NC_052532.1Genomic Context describing neighboring genes Neighboring gene translation initiation factor IF-2-like Neighboring gene high mobility group nucleosome binding domain 1 Neighboring gene tryptophan rich basic protein Neighboring gene SH3 domain binding glutamate rich protein Neighboring gene beta-1,3-galactosyltransferase 5 Neighboring gene uncharacterized LOC101750362

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in intraciliary transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in axoneme IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lebercilin-like protein
Names
LCA5L, lebercilin like
Leber congenital amaurosis 5-like
Lebercilin-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052532.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    108091993..108107082 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046905729.1 → XP_046761685.1  lebercilin-like protein isoform X7

    UniProtKB/TrEMBL
    A0A8V0YK10

  2. XM_046905717.1 → XP_046761673.1  lebercilin-like protein isoform X5

    UniProtKB/TrEMBL
    A0A8V0YK10

  3. XM_015301264.4 → XP_015156750.2  lebercilin-like protein isoform X3

    UniProtKB/TrEMBL
    A0A8V0YK10, A0A8V0YK15
    Related
    ENSGALP00010019152.1, ENSGALT00010032383.1
    Conserved Domains (1) summary
    PRK05771
    Location:127 → 325
    PRK05771; V-type ATP synthase subunit I; Validated

  4. XM_416731.8 → XP_416731.5  lebercilin-like protein isoform X1

    UniProtKB/TrEMBL
    A0A8V0YEA2, A0A8V0YK10
    Related
    ENSGALP00010019148.1, ENSGALT00010032379.1
    Conserved Domains (1) summary
    COG1196
    Location:152 → 349
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  5. XM_046905727.1 → XP_046761683.1  lebercilin-like protein isoform X6

    UniProtKB/TrEMBL
    A0A8V0YK10

  6. XM_046905721.1 → XP_046761677.1  lebercilin-like protein isoform X6

    UniProtKB/TrEMBL
    A0A8V0YK10

  7. XM_015301271.4 → XP_015156757.2  lebercilin-like protein isoform X4

    UniProtKB/TrEMBL
    A0A8V0YK10
    Conserved Domains (2) summary
    PRK05771
    Location:70 → 247
    PRK05771; V-type ATP synthase subunit I; Validated
    TIGR02168
    Location:105 → 438
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  8. XM_040652171.2 → XP_040508105.1  lebercilin-like protein isoform X6

    UniProtKB/TrEMBL
    A0A8V0YK10
    Conserved Domains (2) summary
    PRK05771
    Location:24 → 201
    PRK05771; V-type ATP synthase subunit I; Validated
    TIGR02168
    Location:59 → 392
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  9. XM_015301257.4 → XP_015156743.2  lebercilin-like protein isoform X2

    UniProtKB/TrEMBL
    A0A8V0YK10
    Conserved Domains (1) summary
    COG1196
    Location:132 → 329
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  10. XM_046905725.1 → XP_046761681.1  lebercilin-like protein isoform X6

    UniProtKB/TrEMBL
    A0A8V0YK10

  11. XM_040652169.2 → XP_040508103.1  lebercilin-like protein isoform X4

    UniProtKB/TrEMBL
    A0A8V0YK10
    Conserved Domains (2) summary
    PRK05771
    Location:70 → 247
    PRK05771; V-type ATP synthase subunit I; Validated
    TIGR02168
    Location:105 → 438
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052573.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    108181678..108196763 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046909703.1 → XP_046765659.1  lebercilin-like protein isoform X7

    UniProtKB/TrEMBL
    A0A8V0YK10

  2. XM_046909699.1 → XP_046765655.1  lebercilin-like protein isoform X5

    UniProtKB/TrEMBL
    A0A8V0YK10

  3. XM_040659661.2 → XP_040515595.1  lebercilin-like protein isoform X3

    UniProtKB/TrEMBL
    A0A8V0YK10
    Conserved Domains (1) summary
    pfam15619
    Location:164 → 303
    Lebercilin; Ciliary protein causing Leber congenital amaurosis disease

  4. XM_040659659.2 → XP_040515593.1  lebercilin-like protein isoform X1

    UniProtKB/TrEMBL
    A0A8V0YK10
    Conserved Domains (1) summary
    COG1196
    Location:152 → 349
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  5. XM_046909702.1 → XP_046765658.1  lebercilin-like protein isoform X6

    UniProtKB/TrEMBL
    A0A8V0YK10

  6. XM_046909700.1 → XP_046765656.1  lebercilin-like protein isoform X6

    UniProtKB/TrEMBL
    A0A8V0YK10

  7. XM_040659662.2 → XP_040515596.1  lebercilin-like protein isoform X4

    UniProtKB/TrEMBL
    A0A8V0YK10
    Conserved Domains (2) summary
    PRK05771
    Location:70 → 247
    PRK05771; V-type ATP synthase subunit I; Validated
    TIGR02168
    Location:105 → 429
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  8. XM_040659664.2 → XP_040515598.1  lebercilin-like protein isoform X6

    UniProtKB/TrEMBL
    A0A8V0YK10
    Conserved Domains (1) summary
    pfam15619
    Location:61 → 246
    Lebercilin; Ciliary protein causing Leber congenital amaurosis disease

  9. XM_040659660.2 → XP_040515594.1  lebercilin-like protein isoform X2

    UniProtKB/TrEMBL
    A0A8V0YK10
    Conserved Domains (1) summary
    COG1196
    Location:132 → 329
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  10. XM_046909701.1 → XP_046765657.1  lebercilin-like protein isoform X6

    UniProtKB/TrEMBL
    A0A8V0YK10

  11. XM_040659663.2 → XP_040515597.1  lebercilin-like protein isoform X4

    UniProtKB/TrEMBL
    A0A8V0YK10
    Conserved Domains (2) summary
    PRK05771
    Location:70 → 247
    PRK05771; V-type ATP synthase subunit I; Validated
    TIGR02168
    Location:105 → 429
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
Nucleotide Protein
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