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BCOR BCL6 corepressor [ Gallus gallus (chicken) ]

Gene ID: 418574, updated on 17-Aug-2024

Summary

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Symbol
BCORprovided by CGNC
Full Name
BCL6 corepressorprovided by CGNC
Primary source
CGNC:12146
See related
Ensembl:ENSGALG00010002571
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See BCOR in Genome Data Viewer
Location:
chromosome: 1
Exon count:
18
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 1 NC_052532.1 (112464393..112523062)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 1 NC_052573.1 (112519086..112577902)

Chromosome 1 - NC_052532.1Genomic Context describing neighboring genes Neighboring gene basic proline-rich protein-like Neighboring gene translation initiation factor IF-2-like Neighboring gene uncharacterized LOC121107622 Neighboring gene translation initiation factor IF-2-like Neighboring gene uncharacterized LOC121109444 Neighboring gene uncharacterized LOC121106512 Neighboring gene uncharacterized LOC107057076

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription corepressor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
BCL-6 corepressor
Names
BCL-6 interacting corepressor
BCL6 co-repressor

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052532.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    112464393..112523062
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025146057.3 → XP_025001825.2  BCL-6 corepressor isoform X1

    UniProtKB/TrEMBL
    A0A8V0XGB3
    Related
    ENSGALP00010003695.1, ENSGALT00010005942.1
    Conserved Domains (4) summary
    cd14261
    Location:1633 → 1749
    PUFD; PCGF Ub-like fold discriminator of BCOR
    pfam05109
    Location:230 → 668
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    sd00045
    Location:1468 → 1499
    ANK; ANK repeat [structural motif]
    cl39094
    Location:1469 → 1560
    Ank_2; Ankyrin repeats (3 copies)

  2. XM_046911687.1 → XP_046767643.1  BCL-6 corepressor isoform X1

    UniProtKB/TrEMBL
    A0A8V0XGB3

  3. XM_015302080.4 → XP_015157566.3  BCL-6 corepressor isoform X1

    UniProtKB/TrEMBL
    A0A8V0XGB3
    Conserved Domains (4) summary
    cd14261
    Location:1633 → 1749
    PUFD; PCGF Ub-like fold discriminator of BCOR
    pfam05109
    Location:230 → 668
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    sd00045
    Location:1468 → 1499
    ANK; ANK repeat [structural motif]
    cl39094
    Location:1469 → 1560
    Ank_2; Ankyrin repeats (3 copies)

  4. XM_025146062.3 → XP_025001830.2  BCL-6 corepressor isoform X1

    UniProtKB/TrEMBL
    A0A8V0XGB3
    Conserved Domains (4) summary
    cd14261
    Location:1633 → 1749
    PUFD; PCGF Ub-like fold discriminator of BCOR
    pfam05109
    Location:230 → 668
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    sd00045
    Location:1468 → 1499
    ANK; ANK repeat [structural motif]
    cl39094
    Location:1469 → 1560
    Ank_2; Ankyrin repeats (3 copies)

  5. XM_040665145.2 → XP_040521079.1  BCL-6 corepressor isoform X3

    UniProtKB/TrEMBL
    A0A8V0XAJ6
    Related
    ENSGALP00010003671.1, ENSGALT00010005899.1
    Conserved Domains (4) summary
    cd14261
    Location:1599 → 1715
    PUFD; PCGF Ub-like fold discriminator of BCOR
    pfam05109
    Location:230 → 668
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    sd00045
    Location:1434 → 1465
    ANK; ANK repeat [structural motif]
    cl39094
    Location:1435 → 1526
    Ank_2; Ankyrin repeats (3 copies)

  6. XM_040665159.2 → XP_040521093.1  BCL-6 corepressor isoform X5

    UniProtKB/TrEMBL
    A0A8V0XDK4
    Related
    ENSGALP00010003694.1, ENSGALT00010005940.1
    Conserved Domains (4) summary
    cd14261
    Location:1515 → 1631
    PUFD; PCGF Ub-like fold discriminator of BCOR
    pfam05109
    Location:230 → 668
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    sd00045
    Location:1350 → 1381
    ANK; ANK repeat [structural motif]
    cl39094
    Location:1351 → 1442
    Ank_2; Ankyrin repeats (3 copies)

  7. XM_040665138.2 → XP_040521072.1  BCL-6 corepressor isoform X2

    Conserved Domains (4) summary
    cd14261
    Location:1615 → 1731
    PUFD; PCGF Ub-like fold discriminator of BCOR
    pfam05109
    Location:230 → 668
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    sd00045
    Location:1450 → 1481
    ANK; ANK repeat [structural motif]
    cl39094
    Location:1451 → 1542
    Ank_2; Ankyrin repeats (3 copies)

  8. XM_040665154.2 → XP_040521088.1  BCL-6 corepressor isoform X4

    UniProtKB/TrEMBL
    A0A8V0XH78
    Related
    ENSGALP00010003693.1, ENSGALT00010005939.1
    Conserved Domains (4) summary
    cd14261
    Location:1581 → 1697
    PUFD; PCGF Ub-like fold discriminator of BCOR
    pfam05109
    Location:230 → 668
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    sd00045
    Location:1416 → 1447
    ANK; ANK repeat [structural motif]
    cl39094
    Location:1417 → 1508
    Ank_2; Ankyrin repeats (3 copies)

  9. XM_040665168.2 → XP_040521102.1  BCL-6 corepressor isoform X6

    Conserved Domains (4) summary
    cd14261
    Location:1497 → 1613
    PUFD; PCGF Ub-like fold discriminator of BCOR
    pfam05109
    Location:230 → 668
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    sd00045
    Location:1332 → 1363
    ANK; ANK repeat [structural motif]
    cl39094
    Location:1333 → 1424
    Ank_2; Ankyrin repeats (3 copies)

  10. XM_046911671.1 → XP_046767627.1  BCL-6 corepressor isoform X1

    UniProtKB/TrEMBL
    A0A8V0XGB3

  11. XM_046911678.1 → XP_046767634.1  BCL-6 corepressor isoform X1

    UniProtKB/TrEMBL
    A0A8V0XGB3

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052573.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    112519086..112577902
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040661799.2 → XP_040517733.1  BCL-6 corepressor isoform X1

    Conserved Domains (5) summary
    cd14261
    Location:1633 → 1749
    PUFD; PCGF Ub-like fold discriminator of BCOR
    pfam05109
    Location:230 → 668
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    sd00045
    Location:1468 → 1499
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:1472 → 1563
    Ank_2; Ankyrin repeats (3 copies)
    pfam15808
    Location:1201 → 1418
    BCOR; BCL-6 co-repressor, non-ankyrin-repeat region

  2. XM_040661800.2 → XP_040517734.1  BCL-6 corepressor isoform X1

    Conserved Domains (5) summary
    cd14261
    Location:1633 → 1749
    PUFD; PCGF Ub-like fold discriminator of BCOR
    pfam05109
    Location:230 → 668
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    sd00045
    Location:1468 → 1499
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:1472 → 1563
    Ank_2; Ankyrin repeats (3 copies)
    pfam15808
    Location:1201 → 1418
    BCOR; BCL-6 co-repressor, non-ankyrin-repeat region

  3. XM_040661798.2 → XP_040517732.1  BCL-6 corepressor isoform X1

    Conserved Domains (5) summary
    cd14261
    Location:1633 → 1749
    PUFD; PCGF Ub-like fold discriminator of BCOR
    pfam05109
    Location:230 → 668
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    sd00045
    Location:1468 → 1499
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:1472 → 1563
    Ank_2; Ankyrin repeats (3 copies)
    pfam15808
    Location:1201 → 1418
    BCOR; BCL-6 co-repressor, non-ankyrin-repeat region

  4. XM_040661802.2 → XP_040517736.1  BCL-6 corepressor isoform X3

    Conserved Domains (5) summary
    cd14261
    Location:1599 → 1715
    PUFD; PCGF Ub-like fold discriminator of BCOR
    pfam05109
    Location:230 → 668
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    sd00045
    Location:1434 → 1465
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:1438 → 1529
    Ank_2; Ankyrin repeats (3 copies)
    pfam15808
    Location:1167 → 1384
    BCOR; BCL-6 co-repressor, non-ankyrin-repeat region

  5. XM_040661804.2 → XP_040517738.1  BCL-6 corepressor isoform X5

    Conserved Domains (5) summary
    cd14261
    Location:1515 → 1631
    PUFD; PCGF Ub-like fold discriminator of BCOR
    pfam05109
    Location:230 → 668
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    sd00045
    Location:1350 → 1381
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:1354 → 1445
    Ank_2; Ankyrin repeats (3 copies)
    pfam15808
    Location:1084 → 1300
    BCOR; BCL-6 co-repressor, non-ankyrin-repeat region

  6. XM_040661801.2 → XP_040517735.1  BCL-6 corepressor isoform X2

    Conserved Domains (5) summary
    cd14261
    Location:1615 → 1731
    PUFD; PCGF Ub-like fold discriminator of BCOR
    pfam05109
    Location:230 → 668
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    sd00045
    Location:1450 → 1481
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:1454 → 1545
    Ank_2; Ankyrin repeats (3 copies)
    pfam15808
    Location:1183 → 1400
    BCOR; BCL-6 co-repressor, non-ankyrin-repeat region

  7. XM_040661803.2 → XP_040517737.1  BCL-6 corepressor isoform X4

    Conserved Domains (5) summary
    cd14261
    Location:1581 → 1697
    PUFD; PCGF Ub-like fold discriminator of BCOR
    pfam05109
    Location:230 → 668
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    sd00045
    Location:1416 → 1447
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:1420 → 1511
    Ank_2; Ankyrin repeats (3 copies)
    pfam15808
    Location:1149 → 1366
    BCOR; BCL-6 co-repressor, non-ankyrin-repeat region

  8. XM_040661805.2 → XP_040517739.1  BCL-6 corepressor isoform X6

    Conserved Domains (5) summary
    cd14261
    Location:1497 → 1613
    PUFD; PCGF Ub-like fold discriminator of BCOR
    pfam05109
    Location:230 → 668
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    sd00045
    Location:1332 → 1363
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:1336 → 1427
    Ank_2; Ankyrin repeats (3 copies)
    pfam15808
    Location:1066 → 1282
    BCOR; BCL-6 co-repressor, non-ankyrin-repeat region

  9. XM_046909839.1 → XP_046765795.1  BCL-6 corepressor isoform X1

  10. XM_046909840.1 → XP_046765796.1  BCL-6 corepressor isoform X1

Nucleotide Protein Strain
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