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AP1S2 adaptor related protein complex 1 sigma 2 subunit [ Gallus gallus (chicken) ]

Gene ID: 418621, updated on 3-Dec-2024

Summary

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Symbol
AP1S2provided by CGNC
Full Name
adaptor related protein complex 1 sigma 2 subunitprovided by CGNC
Primary source
CGNC:50808
See related
Ensembl:ENSGALG00010001510
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See AP1S2 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
11
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 1 NC_052532.1 (121950320..121984294)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 1 NC_052573.1 (121940483..121974467)

Chromosome 1 - NC_052532.1Genomic Context describing neighboring genes Neighboring gene gastrin releasing peptide receptor Neighboring gene uncharacterized LOC121109388 Neighboring gene zinc finger CCCH-type, RNA binding motif and serine/arginine rich 2 Neighboring gene uncharacterized LOC124417116 Neighboring gene transmembrane protein 27

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • AC025048.1

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables clathrin adaptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of AP-1 adaptor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in intracellular membrane-bounded organelle IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of membrane coat IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
AP-1 complex subunit sigma-2
Names
adaptor related protein complex 1 subunit sigma 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001006261.2 → NP_001006261.2  AP-1 complex subunit sigma-2

    Status: PROVISIONAL

    Source sequence(s)
    JAENSK010000022
    UniProtKB/TrEMBL
    F1NHS7, Q5ZJX2, Q5ZKL8
    Conserved Domains (1) summary
    cd14831
    Location:2 → 144
    AP1_sigma; AP-1 complex subunit sigma

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052532.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    121950320..121984294
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015273167.4 → XP_015128653.1  AP-1 complex subunit sigma-2 isoform X2

    UniProtKB/TrEMBL
    A0A8V0XBT5, Q5ZJX2, Q5ZKL8
    Related
    ENSGALP00010001936.1, ENSGALT00010003494.1
    Conserved Domains (1) summary
    cd14831
    Location:2 → 144
    AP1_sigma; AP-1 complex subunit sigma

  2. XM_015273183.4 → XP_015128669.1  AP-1 complex subunit sigma-2 isoform X4

    UniProtKB/TrEMBL
    A0A8V0X5U8
    Conserved Domains (1) summary
    cd14831
    Location:2 → 142
    AP1_sigma; AP-1 complex subunit sigma

  3. XM_025149728.3 → XP_025005496.1  AP-1 complex subunit sigma-2 isoform X1

    UniProtKB/TrEMBL
    A0A8V0XBM2
    Conserved Domains (1) summary
    pfam01217
    Location:1 → 141
    Clat_adaptor_s; Clathrin adaptor complex small chain

  4. XM_015273190.3 → XP_015128676.1  AP-1 complex subunit sigma-2 isoform X5

    UniProtKB/TrEMBL
    A0A8V0X5U8
    Conserved Domains (1) summary
    cd14831
    Location:2 → 143
    AP1_sigma; AP-1 complex subunit sigma

  5. XM_025149742.3 → XP_025005510.1  AP-1 complex subunit sigma-2 isoform X3

    UniProtKB/TrEMBL
    F1NHS7, Q5ZJX2, Q5ZKL8
    Related
    ENSGALP00010001940.1, ENSGALT00010003498.1
    Conserved Domains (1) summary
    cd14831
    Location:2 → 144
    AP1_sigma; AP-1 complex subunit sigma

  6. XM_025149747.3 → XP_025005515.1  AP-1 complex subunit sigma-2 isoform X4

    UniProtKB/TrEMBL
    A0A8V0X5U8
    Conserved Domains (1) summary
    cd14831
    Location:2 → 142
    AP1_sigma; AP-1 complex subunit sigma

  7. XM_040698806.2 → XP_040554740.1  AP-1 complex subunit sigma-2 isoform X4

    UniProtKB/TrEMBL
    A0A8V0X5U8
    Related
    ENSGALP00010001934.1, ENSGALT00010003492.1
    Conserved Domains (1) summary
    cd14831
    Location:2 → 142
    AP1_sigma; AP-1 complex subunit sigma

  8. XM_025149737.3 → XP_025005505.1  AP-1 complex subunit sigma-2 isoform X1

    UniProtKB/TrEMBL
    A0A8V0XBM2
    Conserved Domains (1) summary
    pfam01217
    Location:1 → 141
    Clat_adaptor_s; Clathrin adaptor complex small chain

  9. XM_025149735.3 → XP_025005503.1  AP-1 complex subunit sigma-2 isoform X1

    UniProtKB/TrEMBL
    A0A8V0XBM2
    Conserved Domains (1) summary
    pfam01217
    Location:1 → 141
    Clat_adaptor_s; Clathrin adaptor complex small chain

  10. XM_025149733.3 → XP_025005501.1  AP-1 complex subunit sigma-2 isoform X1

    UniProtKB/TrEMBL
    A0A8V0XBM2
    Conserved Domains (1) summary
    pfam01217
    Location:1 → 141
    Clat_adaptor_s; Clathrin adaptor complex small chain

  11. XM_025149740.3 → XP_025005508.1  AP-1 complex subunit sigma-2 isoform X1

    UniProtKB/TrEMBL
    A0A8V0XBM2
    Related
    ENSGALP00010001933.1, ENSGALT00010003491.1
    Conserved Domains (1) summary
    pfam01217
    Location:1 → 141
    Clat_adaptor_s; Clathrin adaptor complex small chain

RNA

  1. XR_001461883.4 RNA Sequence

  2. XR_006939146.1 RNA Sequence

    Related
    ENSGALT00010003499.1

  3. XR_001461881.4 RNA Sequence

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052573.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    121940483..121974467
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046907993.1 → XP_046763949.1  AP-1 complex subunit sigma-2 isoform X2

    UniProtKB/TrEMBL
    A0A8V0XBT5, Q5ZJX2, Q5ZKL8

  2. XM_046907995.1 → XP_046763951.1  AP-1 complex subunit sigma-2 isoform X4

    UniProtKB/TrEMBL
    A0A8V0X5U8

  3. XM_046907988.1 → XP_046763944.1  AP-1 complex subunit sigma-2 isoform X1

  4. XM_046907998.1 → XP_046763954.1  AP-1 complex subunit sigma-2 isoform X5

    UniProtKB/TrEMBL
    A0A8V0X5U8

  5. XM_046907994.1 → XP_046763950.1  AP-1 complex subunit sigma-2 isoform X3

    UniProtKB/TrEMBL
    F1NHS7, Q5ZJX2, Q5ZKL8

  6. XM_046907997.1 → XP_046763953.1  AP-1 complex subunit sigma-2 isoform X4

    UniProtKB/TrEMBL
    A0A8V0X5U8

  7. XM_046907996.1 → XP_046763952.1  AP-1 complex subunit sigma-2 isoform X4

    UniProtKB/TrEMBL
    A0A8V0X5U8

  8. XM_046907990.1 → XP_046763946.1  AP-1 complex subunit sigma-2 isoform X1

  9. XM_046907991.1 → XP_046763947.1  AP-1 complex subunit sigma-2 isoform X1

  10. XM_046907989.1 → XP_046763945.1  AP-1 complex subunit sigma-2 isoform X1

  11. XM_046907992.1 → XP_046763948.1  AP-1 complex subunit sigma-2 isoform X1

RNA

  1. XR_006932715.1 RNA Sequence

  2. XR_006932713.1 RNA Sequence

  3. XR_006932714.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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