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OFD1 OFD1, centriole and centriolar satellite protein [ Gallus gallus (chicken) ]

Gene ID: 418633, updated on 17-Aug-2024

Summary

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Symbol
OFD1provided by CGNC
Full Name
OFD1, centriole and centriolar satellite proteinprovided by CGNC
Primary source
CGNC:12417
See related
Ensembl:ENSGALG00010002408
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See OFD1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
22
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 1 NC_052532.1 (123059529..123088803, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 1 NC_052573.1 (123022735..123052009, complement)

Chromosome 1 - NC_052532.1Genomic Context describing neighboring genes Neighboring gene gem nuclear organelle associated protein 8 Neighboring gene glycoprotein M6B Neighboring gene trafficking protein particle complex 2 Neighboring gene RAB9A, member RAS oncogene family Neighboring gene maestro heat-like repeat-containing protein family member 2A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in epithelial cilium movement involved in determination of left/right asymmetry IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in centrosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in ciliary basal body IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
oral-facial-digital syndrome 1 protein
Names
oral-facial-digital syndrome 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052532.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    123059529..123088803 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_416831.8 → XP_416831.3  oral-facial-digital syndrome 1 protein isoform X1

    UniProtKB/TrEMBL
    V9GVH4
    Related
    ENSGALP00010003369.1, ENSGALT00010005530.1
    Conserved Domains (2) summary
    smart00667
    Location:70 → 97
    LisH; Lissencephaly type-1-like homology motif
    COG1196
    Location:229 → 550
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  2. XM_004934713.5 → XP_004934770.2  oral-facial-digital syndrome 1 protein isoform X2

    UniProtKB/TrEMBL
    V9GVH4
    Related
    ENSGALP00010003371.1, ENSGALT00010005532.1
    Conserved Domains (2) summary
    smart00667
    Location:27 → 54
    LisH; Lissencephaly type-1-like homology motif
    COG1196
    Location:186 → 507
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  3. XM_040662130.2 → XP_040518064.1  oral-facial-digital syndrome 1 protein isoform X2

    UniProtKB/TrEMBL
    V9GVH4
    Conserved Domains (2) summary
    smart00667
    Location:27 → 54
    LisH; Lissencephaly type-1-like homology motif
    COG1196
    Location:186 → 507
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  4. XM_004934712.5 → XP_004934769.2  oral-facial-digital syndrome 1 protein isoform X2

    UniProtKB/TrEMBL
    V9GVH4
    Conserved Domains (2) summary
    smart00667
    Location:27 → 54
    LisH; Lissencephaly type-1-like homology motif
    COG1196
    Location:186 → 507
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052573.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    123022735..123052009 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040662230.2 → XP_040518164.1  oral-facial-digital syndrome 1 protein isoform X1

    UniProtKB/TrEMBL
    V9GVH4
    Conserved Domains (2) summary
    smart00667
    Location:70 → 97
    LisH; Lissencephaly type-1-like homology motif
    COG1196
    Location:229 → 550
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  2. XM_040662232.2 → XP_040518166.1  oral-facial-digital syndrome 1 protein isoform X2

    UniProtKB/TrEMBL
    V9GVH4
    Conserved Domains (2) summary
    smart00667
    Location:27 → 54
    LisH; Lissencephaly type-1-like homology motif
    COG1196
    Location:186 → 507
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  3. XM_040662233.2 → XP_040518167.1  oral-facial-digital syndrome 1 protein isoform X2

    UniProtKB/TrEMBL
    V9GVH4
    Conserved Domains (2) summary
    smart00667
    Location:27 → 54
    LisH; Lissencephaly type-1-like homology motif
    COG1196
    Location:186 → 507
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  4. XM_040662231.2 → XP_040518165.1  oral-facial-digital syndrome 1 protein isoform X2

    UniProtKB/TrEMBL
    V9GVH4
    Conserved Domains (2) summary
    smart00667
    Location:27 → 54
    LisH; Lissencephaly type-1-like homology motif
    COG1196
    Location:186 → 507
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
Nucleotide Protein Strain
Heading Accession and Version

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