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RAB9A RAB9A, member RAS oncogene family [ Gallus gallus (chicken) ]

Gene ID: 418635, updated on 17-Aug-2024

Summary

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Symbol
RAB9Aprovided by CGNC
Full Name
RAB9A, member RAS oncogene familyprovided by CGNC
Primary source
CGNC:50812
See related
Ensembl:ENSGALG00010002448
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
RAB9
Orthologs
human mouse all
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Genomic context

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See RAB9A in Genome Data Viewer
Location:
chromosome: 1
Exon count:
8
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 1 NC_052532.1 (123095625..123118383, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 1 NC_052573.1 (123071759..123081629, complement) , (123058828..123066949, complement)

Chromosome 1 - NC_052532.1Genomic Context describing neighboring genes Neighboring gene glycoprotein M6B Neighboring gene OFD1, centriole and centriolar satellite protein Neighboring gene trafficking protein particle complex 2 Neighboring gene maestro heat-like repeat-containing protein family member 2A Neighboring gene maestro heat-like repeat-containing protein family member 2B like 27

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in Rab protein signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in retrograde transport, endosome to Golgi IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in late endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in lysosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in phagocytic vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ras-related protein Rab-9A
Names
RAB9, member RAS oncogene family

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001008678.2 → NP_001008678.1  ras-related protein Rab-9A

    See identical proteins and their annotated locations for NP_001008678.1

    Status: PROVISIONAL

    Source sequence(s)
    JAENSK010000023
    UniProtKB/TrEMBL
    Q5ZMI5
    Related
    ENSGALP00010003482.1, ENSGALT00010005643.1
    Conserved Domains (1) summary
    cd04116
    Location:4 → 172
    Rab9; Rab GTPase family 9 (Rab9)

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052532.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    123095625..123118383 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015273566.4 → XP_015129052.1  ras-related protein Rab-9A isoform X1

    UniProtKB/TrEMBL
    Q5ZMI5
    Related
    ENSGALP00010003488.1, ENSGALT00010005649.1
    Conserved Domains (1) summary
    cd04116
    Location:4 → 172
    Rab9; Rab GTPase family 9 (Rab9)

  2. XM_015273561.4 → XP_015129047.1  ras-related protein Rab-9A isoform X1

    UniProtKB/TrEMBL
    Q5ZMI5
    Conserved Domains (1) summary
    cd04116
    Location:4 → 172
    Rab9; Rab GTPase family 9 (Rab9)

  3. XM_040698873.2 → XP_040554807.1  ras-related protein Rab-9A isoform X1

    UniProtKB/TrEMBL
    Q5ZMI5
    Related
    ENSGALP00010003487.1, ENSGALT00010005648.1
    Conserved Domains (1) summary
    cd04116
    Location:4 → 172
    Rab9; Rab GTPase family 9 (Rab9)

RNA

  1. XR_006939173.1 RNA Sequence

  2. XR_006939171.1 RNA Sequence

  3. XR_006939175.1 RNA Sequence

  4. XR_006939180.1 RNA Sequence

  5. XR_006939174.1 RNA Sequence

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052573.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    123058828..123066949 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

  2. NC_052573.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    123071759..123081629 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046908007.1 → XP_046763963.1  ras-related protein Rab-9A isoform X1

    UniProtKB/TrEMBL
    Q5ZMI5

  2. XM_046908006.1 → XP_046763962.1  ras-related protein Rab-9A isoform X1

    UniProtKB/TrEMBL
    Q5ZMI5

  3. XM_046908008.1 → XP_046763964.1  ras-related protein Rab-9A isoform X1

    UniProtKB/TrEMBL
    Q5ZMI5
Nucleotide Protein Strain
Heading Accession and Version

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