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h-cup heineken-cup [ Drosophila melanogaster (fruit fly) ]

Gene ID: 41879, updated on 9-Dec-2024

Summary

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Official Symbol
h-cupprovided by FlyBase
Official Full Name
heineken-cupprovided by FlyBase
Primary source
FLYBASE:FBgn0038334
Locus tag
Dmel_CG6130
See related
AllianceGenome:FB:FBgn0038334
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
anon-WO0140519.172; CG6130; Dmel\CG6130
Summary
Is expressed in adult head; elongation stage spermatid; and primary spermatocyte. [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
all
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Genomic context

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See h-cup in Genome Data Viewer
Location:
88F3-88F3; 3-57 cM
Exon count:
1
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (15381407..15382951, complement)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (11207129..11208673, complement)

Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene Cerebral cavernous malformation 3 Neighboring gene RIM-binding protein Neighboring gene antisense RNA:CR46058 Neighboring gene uncharacterized protein Neighboring gene Ataxin-2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Post-meiotic transcription in Drosophila testes. Barreau C, et al. Development, 2008 Jun. PMID 18434411
  2. Genome-wide association analysis of oxidative stress resistance in Drosophila melanogaster. Weber AL, et al. PLoS One, 2012. PMID 22496853, Free PMC Article
  3. A protein complex network of Drosophila melanogaster. Guruharsha KG, et al. Cell, 2011 Oct 28. PMID 22036573, Free PMC Article
  4. Next-generation large-scale binary protein interaction network for Drosophila melanogaster. Tang HW, et al. Nat Commun, 2023 Apr 15. PMID 37061542, Free PMC Article
  5. CRISPR-based modular assembly of a UAS-cDNA/ORF plasmid library for more than 5500 Drosophila genes conserved in humans. Wei P, et al. Genome Res, 2020 Jan. PMID 31722958, Free PMC Article

See all (24) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by FlyBase

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
heineken-cup
Names
CG6130-PA
h-cup-PA

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_033777.3 Reference assembly

    Range
    15381407..15382951 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_142205.2 → NP_650462.1  heineken-cup [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_650462.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0AN28, Q9VF68
    Related
    FBpp0082561, FBtr0083107
    Conserved Domains (1) summary
    pfam05769
    Location:12 → 173
    DUF837; Protein of unknown function (DUF837)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9VF68 Q9VF68

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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