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PDS5B PDS5 cohesin associated factor B [ Gallus gallus (chicken) ]

Gene ID: 418910, updated on 3-Dec-2024

Summary

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Symbol
PDS5Bprovided by CGNC
Full Name
PDS5 cohesin associated factor Bprovided by CGNC
Primary source
CGNC:12819
See related
Ensembl:ENSGALG00010006657
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
APRIN
Orthologs
human mouse all
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Genomic context

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See PDS5B in Genome Data Viewer
Location:
chromosome: 1
Exon count:
37
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 1 NC_052532.1 (174234116..174336037, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 1 NC_052573.1 (174317797..174418209, complement)

Chromosome 1 - NC_052532.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107052071 Neighboring gene uncharacterized LOC124417662 Neighboring gene uncharacterized LOC101747501 Neighboring gene NEDD4 binding protein 2 like 2 Neighboring gene uncharacterized LOC121106501 Neighboring gene NEDD4 binding protein 2 like 1 Neighboring gene BRCA2, DNA repair associated

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Chicken genomics resource: sequencing and annotation of 35,407 ESTs from single and multiple tissue cDNA libraries and CAP3 assembly of a chicken gene index. Carre W, et al. Physiol Genomics, 2006 May 16. PMID 16554550
  2. A comprehensive collection of chicken cDNAs. Boardman PE, et al. Curr Biol, 2002 Nov 19. PMID 12445392
  3. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in DNA repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mitotic sister chromatid cohesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of chromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sister chromatid cohesion protein PDS5 homolog B
Names
PDS5, regulator of cohesion maintenance, homolog B
androgen-induced proliferation inhibitor

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001012827.3 → NP_001012845.3  sister chromatid cohesion protein PDS5 homolog B

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000027
    UniProtKB/TrEMBL
    A0A8V0XT87, A0A8V0XYX7
    Related
    ENSGALP00010009194.1, ENSGALT00010015934.1
    Conserved Domains (2) summary
    PTZ00108
    Location:1210 → 1419
    PTZ00108; DNA topoisomerase 2-like protein; Provisional
    sd00044
    Location:240 → 261
    HEAT; HEAT repeat [structural motif]

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052532.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    174234116..174336037 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046941892.1 → XP_046797848.1  sister chromatid cohesion protein PDS5 homolog B isoform X4

    UniProtKB/TrEMBL
    A0A8V0XT87, A0A8V0XYX7
    Related
    ENSGALP00010009187.1, ENSGALT00010015915.1

  2. XM_040700089.2 → XP_040556023.1  sister chromatid cohesion protein PDS5 homolog B isoform X1

    UniProtKB/TrEMBL
    A0A8V0XYX7
    Conserved Domains (2) summary
    PTZ00108
    Location:1212 → 1421
    PTZ00108; DNA topoisomerase 2-like protein; Provisional
    sd00044
    Location:240 → 261
    HEAT; HEAT repeat [structural motif]

  3. XM_015277870.3 → XP_015133356.2  sister chromatid cohesion protein PDS5 homolog B isoform X3

    UniProtKB/TrEMBL
    A0A8V0XYX7
    Related
    ENSGALP00010009193.1, ENSGALT00010015930.1
    Conserved Domains (1) summary
    sd00044
    Location:240 → 261
    HEAT; HEAT repeat [structural motif]

  4. XM_015277867.3 → XP_015133353.2  sister chromatid cohesion protein PDS5 homolog B isoform X2

    UniProtKB/TrEMBL
    A0A8V0XR77, A0A8V0XYX7
    Related
    ENSGALP00010009191.1, ENSGALT00010015924.1
    Conserved Domains (2) summary
    PTZ00108
    Location:1190 → 1387
    PTZ00108; DNA topoisomerase 2-like protein; Provisional
    sd00044
    Location:240 → 261
    HEAT; HEAT repeat [structural motif]

  5. XM_015277841.3 → XP_015133327.2  sister chromatid cohesion protein PDS5 homolog B isoform X1

    UniProtKB/TrEMBL
    A0A8V0XYX7
    Conserved Domains (2) summary
    PTZ00108
    Location:1212 → 1421
    PTZ00108; DNA topoisomerase 2-like protein; Provisional
    sd00044
    Location:240 → 261
    HEAT; HEAT repeat [structural motif]

  6. XM_015277851.4 → XP_015133337.2  sister chromatid cohesion protein PDS5 homolog B isoform X1

    UniProtKB/TrEMBL
    A0A8V0XYX7
    Conserved Domains (2) summary
    PTZ00108
    Location:1212 → 1421
    PTZ00108; DNA topoisomerase 2-like protein; Provisional
    sd00044
    Location:240 → 261
    HEAT; HEAT repeat [structural motif]

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052573.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    174317797..174418209 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046908299.1 → XP_046764255.1  sister chromatid cohesion protein PDS5 homolog B isoform X3

    UniProtKB/Swiss-Prot
    Q5F3U9
    UniProtKB/TrEMBL
    A0A8V0XYX7

  2. XM_046908298.1 → XP_046764254.1  sister chromatid cohesion protein PDS5 homolog B isoform X2

    UniProtKB/TrEMBL
    A0A8V0XYX7

  3. XM_046908296.1 → XP_046764252.1  sister chromatid cohesion protein PDS5 homolog B isoform X1

    UniProtKB/TrEMBL
    A0A8V0XYX7

  4. XM_046908297.1 → XP_046764253.1  sister chromatid cohesion protein PDS5 homolog B isoform X1

    UniProtKB/TrEMBL
    A0A8V0XYX7
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5F3U9.3 GenPept UniProtKB/Swiss-Prot:Q5F3U9

Gene LinkOut

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