U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

NPAT nuclear protein, coactivator of histone transcription [ Gallus gallus (chicken) ]

Gene ID: 418967, updated on 17-Aug-2024

Summary

Go to the top of the page Help
Symbol
NPATprovided by CGNC
Full Name
nuclear protein, coactivator of histone transcriptionprovided by CGNC
Primary source
CGNC:12889
See related
Ensembl:ENSGALG00010004868
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See NPAT in Genome Data Viewer
Location:
chromosome: 1
Exon count:
18
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 1 NC_052532.1 (180192093..180213218)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 1 NC_052573.1 (180224741..180245882)

Chromosome 1 - NC_052532.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121109181 Neighboring gene ATM serine/threonine kinase Neighboring gene acetyl-CoA acetyltransferase 1 Neighboring gene cullin 5

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coregulator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
protein NPAT
Names
nuclear protein, ataxia-telangiectasia locus
nuclear protein, co-activator of histone transcription

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052532.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    180192093..180213218
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015279515.4 → XP_015135001.3  protein NPAT isoform X1

    UniProtKB/TrEMBL
    A0A8V0XE31
    Related
    ENSGALP00010006392.1, ENSGALT00010011354.1
    Conserved Domains (1) summary
    TIGR03835
    Location:658 → 877
    termin_org_DnaJ; terminal organelle assembly protein TopJ

  2. XM_015279520.4 → XP_015135006.3  protein NPAT isoform X3

    Conserved Domains (1) summary
    TIGR03835
    Location:656 → 875
    termin_org_DnaJ; terminal organelle assembly protein TopJ

  3. XM_015279517.4 → XP_015135003.3  protein NPAT isoform X2

    Conserved Domains (1) summary
    TIGR03835
    Location:657 → 876
    termin_org_DnaJ; terminal organelle assembly protein TopJ

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052573.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    180224741..180245882
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040659146.2 → XP_040515080.1  protein NPAT isoform X1

    Conserved Domains (1) summary
    TIGR03835
    Location:658 → 877
    termin_org_DnaJ; terminal organelle assembly protein TopJ

  2. XM_040659148.2 → XP_040515082.1  protein NPAT isoform X3

    Conserved Domains (1) summary
    TIGR03835
    Location:656 → 875
    termin_org_DnaJ; terminal organelle assembly protein TopJ

  3. XM_040659147.2 → XP_040515081.1  protein NPAT isoform X2

    Conserved Domains (1) summary
    TIGR03835
    Location:657 → 876
    termin_org_DnaJ; terminal organelle assembly protein TopJ
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials