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PXDNL peroxidasin like [ Gallus gallus (chicken) ]

Gene ID: 419247, updated on 17-Aug-2024

Summary

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Official Symbol
PXDNLprovided by CGNC
Official Full Name
peroxidasin likeprovided by CGNC
Primary source
CGNC:4394
See related
Ensembl:ENSGALG00010023230
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
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Genomic context

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See PXDNL in Genome Data Viewer
Location:
chromosome: 20
Exon count:
23
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 20 NC_052551.1 (9377653..9419214, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 20 NC_052592.1 (9159740..9201343, complement)

Chromosome 20 - NC_052551.1Genomic Context describing neighboring genes Neighboring gene pancreatic progenitor cell differentiation and proliferation factor Neighboring gene protein tyrosine kinase 6 Neighboring gene protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2 Neighboring gene myelin transcription factor 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables heme binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables peroxidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in response to oxidative stress IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
peroxidasin-like protein; peroxidasin homolog
Names
peroxidasin homolog-like
XP_040544049.1
XP_417421.4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052551.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    9377653..9419214 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_417421.8 → XP_417421.4  peroxidasin homolog

    UniProtKB/TrEMBL
    A0A8V0ZS81, A0A8V0ZZQ7
    Related
    ENSGALP00010034393.1, ENSGALT00010056651.1
    Conserved Domains (9) summary
    cd05746
    Location:530 → 598
    Ig4_Peroxidasin; Fourth immunoglobulin (Ig)-like domain of peroxidasin
    cd09826
    Location:851 → 1291
    peroxidasin_like; Animal heme peroxidase domain of peroxidasin and related proteins
    smart00408
    Location:248 → 312
    IGc2; Immunoglobulin C-2 Type
    smart00409
    Location:336 → 417
    IG; Immunoglobulin
    COG4886
    Location:85 → 180
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00031
    Location:52 → 99
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:33 → 51
    LRR_RI; leucine-rich repeat [structural motif]
    cd00096
    Location:438 → 442
    Ig; Ig strand B [structural motif]
    cl11960
    Location:434 → 507
    Ig; Immunoglobulin domain

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052592.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    9159740..9201343 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040688115.2 → XP_040544049.1  peroxidasin homolog

    UniProtKB/TrEMBL
    A0A8V0ZS81
    Conserved Domains (9) summary
    cd05746
    Location:530 → 598
    Ig4_Peroxidasin; Fourth immunoglobulin (Ig)-like domain of peroxidasin
    cd09826
    Location:851 → 1291
    peroxidasin_like; Animal heme peroxidase domain of peroxidasin and related proteins
    smart00408
    Location:248 → 312
    IGc2; Immunoglobulin C-2 Type
    smart00409
    Location:336 → 417
    IG; Immunoglobulin
    COG4886
    Location:85 → 180
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00031
    Location:52 → 99
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:33 → 51
    LRR_RI; leucine-rich repeat [structural motif]
    cd00096
    Location:438 → 442
    Ig; Ig strand B [structural motif]
    cl11960
    Location:434 → 507
    Ig; Immunoglobulin domain
Nucleotide Protein
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