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PRDM16 PR/SET domain 16 [ Gallus gallus (chicken) ]

Gene ID: 419388, updated on 17-Aug-2024

Summary

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Symbol
PRDM16provided by CGNC
Full Name
PR/SET domain 16provided by CGNC
Primary source
CGNC:719
See related
Ensembl:ENSGALG00010019648
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See PRDM16 in Genome Data Viewer
Location:
chromosome: 21
Exon count:
26
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 21 NC_052552.1 (1029448..1428022, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 21 NC_052593.1 (1061131..1459500, complement)

Chromosome 21 - NC_052552.1Genomic Context describing neighboring genes Neighboring gene multiple EGF like domains 6 Neighboring gene Rho guanine nucleotide exchange factor 16 Neighboring gene actin-85C-like Neighboring gene uncharacterized LOC419389 Neighboring gene uncharacterized LOC121107370 Neighboring gene uncharacterized LOC121107369 Neighboring gene actin related protein T2 Neighboring gene tetratricopeptide repeat domain 34 Neighboring gene membrane metallo-endopeptidase-like 1 Neighboring gene uncharacterized LOC124417344 Neighboring gene hes family bHLH transcription factor 5B Neighboring gene hes family bHLH transcription factor 5C Neighboring gene hes family bHLH transcription factor 5A Neighboring gene pantothenate kinase 4 Neighboring gene phospholipase C eta 2 Neighboring gene kainate binding protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Novel SNPs in the PRDM16 gene and their associations with performance traits in chickens. Han R, et al. Mol Biol Rep, 2012 Mar. PMID 21761141
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. The GG genotype of c.1433G>A in PRDM16 favored chicken growth and fatness traits.
    Title: Novel SNPs in the PRDM16 gene and their associations with performance traits in chickens.
Submit: New GeneRIF Correction

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription activator activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone H3K9 methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
PR domain zinc finger protein 16; histone-lysine N-methyltransferase PRDM16
Names
PR domain containing 16
PR domain-containing 16-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052552.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    1029448..1428022 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025142614.3 → XP_024998382.1  histone-lysine N-methyltransferase PRDM16 isoform X2

    UniProtKB/TrEMBL
    A0A8V0ZBQ1
    Conserved Domains (5) summary
    sd00017
    Location:954 → 974
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd19213
    Location:71 → 232
    PR-SET_PRDM16; PR-SET domain found in PR domain zinc finger protein 16 (PRDM16) and similar proteins
    pfam00096
    Location:952 → 974
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:966 → 990
    zf-H2C2_2; Zinc-finger double domain
    cd20908
    Location:982 → 1037
    SUF4-like; N-terminal domain of Oryza sativa transcription factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana SUF4 (AtSUF4), and similar proteins

  2. XM_004947378.5 → XP_004947435.1  histone-lysine N-methyltransferase PRDM16 isoform X1

    UniProtKB/TrEMBL
    A0A8V0ZBQ1
    Conserved Domains (5) summary
    sd00017
    Location:955 → 975
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd19213
    Location:71 → 232
    PR-SET_PRDM16; PR-SET domain found in PR domain zinc finger protein 16 (PRDM16) and similar proteins
    pfam00096
    Location:953 → 975
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:967 → 991
    zf-H2C2_2; Zinc-finger double domain
    cd20908
    Location:983 → 1038
    SUF4-like; N-terminal domain of Oryza sativa transcription factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana SUF4 (AtSUF4), and similar proteins

  3. XM_040651288.2 → XP_040507222.1  histone-lysine N-methyltransferase PRDM16 isoform X4

    UniProtKB/TrEMBL
    A0A1D5PB87
    Conserved Domains (1) summary
    sd00017
    Location:726 → 746
    ZF_C2H2; C2H2 Zn finger [structural motif]

  4. XM_417551.8 → XP_417551.3  histone-lysine N-methyltransferase PRDM16 isoform X3

    UniProtKB/TrEMBL
    A0A1D5PB87, A0A3Q3AHL1
    Related
    ENSGALP00010028089.1, ENSGALT00010047405.1
    Conserved Domains (5) summary
    sd00017
    Location:945 → 965
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd19213
    Location:61 → 222
    PR-SET_PRDM16; PR-SET domain found in PR domain zinc finger protein 16 (PRDM16) and similar proteins
    pfam00096
    Location:943 → 965
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:957 → 981
    zf-H2C2_2; Zinc-finger double domain
    cd20908
    Location:973 → 1028
    SUF4-like; N-terminal domain of Oryza sativa transcription factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana SUF4 (AtSUF4), and similar proteins

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052593.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    1061131..1459500 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040689012.2 → XP_040544946.1  histone-lysine N-methyltransferase PRDM16 isoform X2

    UniProtKB/TrEMBL
    A0A8V0ZBQ1
    Conserved Domains (5) summary
    sd00017
    Location:954 → 974
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd19213
    Location:71 → 232
    PR-SET_PRDM16; PR-SET domain found in PR domain zinc finger protein 16 (PRDM16) and similar proteins
    pfam00096
    Location:952 → 974
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:966 → 990
    zf-H2C2_2; Zinc-finger double domain
    cd20908
    Location:982 → 1037
    SUF4-like; N-terminal domain of Oryza sativa transcription factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana SUF4 (AtSUF4), and similar proteins

  2. XM_040689010.2 → XP_040544944.1  histone-lysine N-methyltransferase PRDM16 isoform X1

    UniProtKB/TrEMBL
    A0A8V0ZBQ1
    Conserved Domains (5) summary
    sd00017
    Location:955 → 975
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd19213
    Location:71 → 232
    PR-SET_PRDM16; PR-SET domain found in PR domain zinc finger protein 16 (PRDM16) and similar proteins
    pfam00096
    Location:953 → 975
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:967 → 991
    zf-H2C2_2; Zinc-finger double domain
    cd20908
    Location:983 → 1038
    SUF4-like; N-terminal domain of Oryza sativa transcription factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana SUF4 (AtSUF4), and similar proteins

  3. XM_040689014.2 → XP_040544948.1  histone-lysine N-methyltransferase PRDM16 isoform X4

    UniProtKB/TrEMBL
    A0A1D5PB87
    Conserved Domains (1) summary
    sd00017
    Location:726 → 746
    ZF_C2H2; C2H2 Zn finger [structural motif]

  4. XM_040689013.2 → XP_040544947.1  histone-lysine N-methyltransferase PRDM16 isoform X3

    UniProtKB/TrEMBL
    A0A1D5PB87, A0A3Q3AHL1
    Conserved Domains (5) summary
    sd00017
    Location:945 → 965
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd19213
    Location:61 → 222
    PR-SET_PRDM16; PR-SET domain found in PR domain zinc finger protein 16 (PRDM16) and similar proteins
    pfam00096
    Location:943 → 965
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:957 → 981
    zf-H2C2_2; Zinc-finger double domain
    cd20908
    Location:973 → 1028
    SUF4-like; N-terminal domain of Oryza sativa transcription factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana SUF4 (AtSUF4), and similar proteins
Nucleotide Protein Strain
Heading Accession and Version

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