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LRRTM4 leucine rich repeat transmembrane neuronal 4 [ Gallus gallus (chicken) ]

Gene ID: 419539, updated on 17-Aug-2024

Summary

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Symbol
LRRTM4provided by CGNC
Full Name
leucine rich repeat transmembrane neuronal 4provided by CGNC
Primary source
CGNC:292
See related
Ensembl:ENSGALG00010020736
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See LRRTM4 in Genome Data Viewer
Location:
chromosome: 22
Exon count:
5
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 22 NC_052553.1 (3695677..3895740, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 22 NC_052594.1 (3732092..3932088, complement)

Chromosome 22 - NC_052553.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107054988 Neighboring gene uncharacterized LOC121107425 Neighboring gene uncharacterized LOC121107426 Neighboring gene uncharacterized LOC121107427 Neighboring gene adrenoceptor alpha 1A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Identification and validation of quantitative trait loci for ascites syndrome in broiler chickens using whole genome resequencing. Parveen A, et al. BMC Genet, 2020 May 20. PMID 32434464, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Identification and validation of quantitative trait loci for ascites syndrome in broiler chickens using whole genome resequencing.
    Title: Identification and validation of quantitative trait loci for ascites syndrome in broiler chickens using whole genome resequencing.
Submit: New GeneRIF Correction

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
leucine-rich repeat transmembrane neuronal protein 4
Names
leucine-rich repeat transmembrane neuronal 4 protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052553.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    3695677..3895740 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040651595.2 → XP_040507529.1  leucine-rich repeat transmembrane neuronal protein 4

    UniProtKB/TrEMBL
    A0A8V0ZFS9, F1NP47
    Related
    ENSGALP00010029615.1, ENSGALT00010050119.1
    Conserved Domains (3) summary
    sd00033
    Location:64 → 86
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:86 → 145
    LRR_8; Leucine rich repeat
    cd21340
    Location:120 → 311
    PPP1R42; protein phosphatase 1 regulatory subunit 42

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052594.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    3732092..3932088 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040689531.2 → XP_040545465.1  leucine-rich repeat transmembrane neuronal protein 4

    UniProtKB/TrEMBL
    A0A8V0ZFS9, F1NP47
    Conserved Domains (3) summary
    sd00033
    Location:64 → 86
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:86 → 145
    LRR_8; Leucine rich repeat
    cd21340
    Location:120 → 311
    PPP1R42; protein phosphatase 1 regulatory subunit 42
Nucleotide Protein Strain
Heading Accession and Version

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