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RASSF5 Ras association domain family member 5 [ Gallus gallus (chicken) ]

Gene ID: 419844, updated on 3-Dec-2024

Summary

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Symbol
RASSF5provided by CGNC
Full Name
Ras association domain family member 5provided by CGNC
Primary source
CGNC:541
See related
Ensembl:ENSGALG00010027117
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See RASSF5 in Genome Data Viewer
Location:
chromosome: 26
Exon count:
8
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 26 NC_052557.1 (2524502..2542043)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 26 NC_052598.1 (2494563..2512117)

Chromosome 26 - NC_052557.1Genomic Context describing neighboring genes Neighboring gene SLIT-ROBO Rho GTPase activating protein 2 Neighboring gene uncharacterized LOC124417407 Neighboring gene inhibitor of nuclear factor kappa B kinase subunit epsilon Neighboring gene eukaryotic translation initiation factor 2D Neighboring gene dual specificity tyrosine phosphorylation regulated kinase 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ras association domain-containing protein 5
Names
Ras association (RalGDS/AF-6) domain family 5
Ras association (RalGDS/AF-6) domain family member 5

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001389341.2 → NP_001376270.1  ras association domain-containing protein 5

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000356
    UniProtKB/TrEMBL
    A0A8V1AEQ3
    Related
    ENSGALP00010040000.1, ENSGALT00010065734.1
    Conserved Domains (2) summary
    cd17220
    Location:54 → 209
    RA_RASSF5; Ras-associating (RA) domain of Ras-association domain family 5 (RASSF5)
    pfam16517
    Location:219 → 257
    Nore1-SARAH; Novel Ras effector 1 C-terminal SARAH (Sav/Rassf/Hpo) domain

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052557.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    2524502..2542043
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040652715.1 → XP_040508649.1  ras association domain-containing protein 5 isoform X2

    Conserved Domains (2) summary
    smart00109
    Location:63 → 108
    C1; Protein kinase C conserved region 1 (C1) domains (Cysteine-rich domains)
    cd17220
    Location:142 → 286
    RA_RASSF5; Ras-associating (RA) domain of Ras-association domain family 5 (RASSF5)

  2. XM_015298926.4 → XP_015154412.1  ras association domain-containing protein 5 isoform X1

    Conserved Domains (3) summary
    pfam00130
    Location:63 → 109
    C1_1; Phorbol esters/diacylglycerol binding domain (C1 domain)
    pfam16517
    Location:306 → 345
    Nore1-SARAH; Novel Ras effector 1 C-terminal SARAH (Sav/Rassf/Hpo) domain
    cl00155
    Location:208 → 300
    UBQ; Ubiquitin-like proteins

  3. XM_046904115.1 → XP_046760071.1  ras association domain-containing protein 5 isoform X3

    UniProtKB/TrEMBL
    A0A3Q3AME4, A0A8V1A288
    Related
    ENSGALP00010040003.1, ENSGALT00010065737.1

  4. XM_040652716.2 → XP_040508650.1  ras association domain-containing protein 5 isoform X4

    UniProtKB/TrEMBL
    A0A8V1AEQ3, Q5ZHZ1
    Conserved Domains (2) summary
    pfam16517
    Location:208 → 246
    Nore1-SARAH; Novel Ras effector 1 C-terminal SARAH (Sav/Rassf/Hpo) domain
    cl28922
    Location:54 → 198
    Ubiquitin_like_fold; Beta-grasp ubiquitin-like fold

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052598.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    2494563..2512117
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046932939.1 → XP_046788895.1  ras association domain-containing protein 5 isoform X2

  2. XM_046932938.1 → XP_046788894.1  ras association domain-containing protein 5 isoform X1

  3. XM_046932941.1 → XP_046788897.1  ras association domain-containing protein 5 isoform X3

    UniProtKB/TrEMBL
    A0A3Q3AME4, A0A8V1A288

  4. XM_046932940.1 → XP_046788896.1  ras association domain-containing protein 5 isoform X5

    UniProtKB/TrEMBL
    A0A8V1A288, A0A8V1ACN8

  5. XM_046932942.1 → XP_046788898.1  ras association domain-containing protein 5 isoform X4

    UniProtKB/TrEMBL
    A0A8V1AEQ3, Q5ZHZ1

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001008452.1: Suppressed sequence

    Description
    NM_001008452.1: This RefSeq was removed because currently there is support for the transcript but not for the protein.
Nucleotide Protein Strain
Heading Accession and Version

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