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CCDC47 coiled-coil domain containing 47 [ Gallus gallus (chicken) ]

Gene ID: 419958, updated on 17-Aug-2024

Summary

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Official Symbol
CCDC47provided by CGNC
Official Full Name
coiled-coil domain containing 47provided by CGNC
Primary source
CGNC:352
See related
Ensembl:ENSGALG00010021666
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See CCDC47 in Genome Data Viewer
Location:
chromosome: 27
Exon count:
13
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 27 NC_052558.1 (2449009..2458883, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 27 NC_052599.1 (3666715..3676597, complement)

Chromosome 27 - NC_052558.1Genomic Context describing neighboring genes Neighboring gene LIM domain containing 2 Neighboring gene ring finger protein 113B Neighboring gene STE20-related kinase adaptor alpha Neighboring gene DEAD-box helicase 42 Neighboring gene parathyroid hormone receptor 3 Neighboring gene myosin, light chain 4, alkali; atrial, embryonic

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endoplasmic reticulum calcium ion homeostasis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
coiled-coil domain-containing protein 47; PAT complex subunit CCDC47

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052558.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    2449009..2458883 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004948537.5 → XP_004948594.2  PAT complex subunit CCDC47

    UniProtKB/TrEMBL
    A0A8V0ZLD8, F1NL71
    Related
    ENSGALP00010031539.1, ENSGALT00010052633.1
    Conserved Domains (2) summary
    pfam07946
    Location:133 → 465
    DUF1682; Protein of unknown function (DUF1682)
    cl01319
    Location:33 → 105
    HARE-HTH; HB1, ASXL, restriction endonuclease HTH domain

  2. XM_004948538.5 → XP_004948595.2  PAT complex subunit CCDC47

    UniProtKB/TrEMBL
    A0A8V0ZLD8, F1NL71
    Related
    ENSGALP00010031543.1, ENSGALT00010052637.1
    Conserved Domains (2) summary
    pfam07946
    Location:133 → 465
    DUF1682; Protein of unknown function (DUF1682)
    cl01319
    Location:33 → 105
    HARE-HTH; HB1, ASXL, restriction endonuclease HTH domain

  3. XM_040653253.2 → XP_040509187.1  PAT complex subunit CCDC47

    UniProtKB/TrEMBL
    A0A8V0ZLD8, F1NL71
    Conserved Domains (2) summary
    pfam07946
    Location:133 → 465
    DUF1682; Protein of unknown function (DUF1682)
    cl01319
    Location:33 → 105
    HARE-HTH; HB1, ASXL, restriction endonuclease HTH domain

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052599.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    3666715..3676597 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040691898.2 → XP_040547832.1  PAT complex subunit CCDC47

    UniProtKB/TrEMBL
    A0A8V0ZLD8, F1NL71
    Conserved Domains (2) summary
    pfam07946
    Location:133 → 465
    DUF1682; Protein of unknown function (DUF1682)
    cl01319
    Location:33 → 105
    HARE-HTH; HB1, ASXL, restriction endonuclease HTH domain

  2. XM_040691896.2 → XP_040547830.1  PAT complex subunit CCDC47

    UniProtKB/TrEMBL
    A0A8V0ZLD8, F1NL71
    Conserved Domains (2) summary
    pfam07946
    Location:133 → 465
    DUF1682; Protein of unknown function (DUF1682)
    cl01319
    Location:33 → 105
    HARE-HTH; HB1, ASXL, restriction endonuclease HTH domain

  3. XM_040691897.2 → XP_040547831.1  PAT complex subunit CCDC47

    UniProtKB/TrEMBL
    A0A8V0ZLD8, F1NL71
    Conserved Domains (2) summary
    pfam07946
    Location:133 → 465
    DUF1682; Protein of unknown function (DUF1682)
    cl01319
    Location:33 → 105
    HARE-HTH; HB1, ASXL, restriction endonuclease HTH domain
Nucleotide Protein Strain
Heading Accession and Version

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