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PTBP1 polypyrimidine tract binding protein 1 [ Gallus gallus (chicken) ]

Gene ID: 420098, updated on 17-Aug-2024

Summary

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Symbol
PTBP1provided by CGNC
Full Name
polypyrimidine tract binding protein 1provided by CGNC
Primary source
CGNC:1388
See related
Ensembl:ENSGALG00010027419
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See PTBP1 in Genome Data Viewer
Location:
chromosome: 28
Exon count:
16
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 28 NC_052559.1 (3227981..3256653)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 28 NC_052600.1 (2794203..2822873)

Chromosome 28 - NC_052559.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101750583 Neighboring gene mitotic spindle positioning Neighboring gene phospholipid phosphatase related 3 Neighboring gene complement factor D

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of RNA splicing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypyrimidine tract-binding protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001030935.1 → NP_001026106.1  polypyrimidine tract-binding protein 1

    See identical proteins and their annotated locations for NP_001026106.1

    Status: PROVISIONAL

    Source sequence(s)
    AJ851444
    UniProtKB/TrEMBL
    Q5F456
    Conserved Domains (5) summary
    cd12693
    Location:151 → 246
    RRM2_PTBP1_like; RNA recognition motif 2 in polypyrimidine tract-binding protein 1 (PTB or hnRNP I) and similar proteins
    cd12695
    Location:333 → 425
    RRM3_PTBP1; RNA recognition motif 3 in vertebrate polypyrimidine tract-binding protein 1 (PTB)
    cd12701
    Location:450 → 525
    RRM4_PTBP1; RNA recognition motif 4 in vertebrate polypyrimidine tract-binding protein 1 (PTB)
    cd12777
    Location:29 → 109
    RRM1_PTBP1; RNA recognition motif 1 in vertebrate polypyrimidine tract-binding protein 1 (PTB)
    TIGR01649
    Location:27 → 526
    hnRNP-L_PTB; hnRNP-L/PTB/hephaestus splicing factor family

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052559.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    3227981..3256653
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015299920.4 → XP_015155406.1  polypyrimidine tract-binding protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8V1ABY0
    Related
    ENSGALP00010040733.1, ENSGALT00010066482.1
    Conserved Domains (1) summary
    TIGR01649
    Location:57 → 560
    hnRNP-L_PTB; hnRNP-L/PTB/hephaestus splicing factor family

  2. XM_015299921.4 → XP_015155407.1  polypyrimidine tract-binding protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A1L1S0D8
    Conserved Domains (1) summary
    TIGR01649
    Location:57 → 556
    hnRNP-L_PTB; hnRNP-L/PTB/hephaestus splicing factor family

  3. XM_015299922.4 → XP_015155408.1  polypyrimidine tract-binding protein 1 isoform X3

    Conserved Domains (1) summary
    TIGR01649
    Location:27 → 530
    hnRNP-L_PTB; hnRNP-L/PTB/hephaestus splicing factor family

  4. XM_046904578.1 → XP_046760534.1  polypyrimidine tract-binding protein 1 isoform X3

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052600.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    2794203..2822873
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046933776.1 → XP_046789732.1  polypyrimidine tract-binding protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8V1ABY0

  2. XM_046933777.1 → XP_046789733.1  polypyrimidine tract-binding protein 1 isoform X2

  3. XM_046933778.1 → XP_046789734.1  polypyrimidine tract-binding protein 1 isoform X3

  4. XM_046933779.1 → XP_046789735.1  polypyrimidine tract-binding protein 1 isoform X3

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
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