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JPH1 junctophilin 1 [ Gallus gallus (chicken) ]

Gene ID: 420190, updated on 17-Aug-2024

Summary

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Official Symbol
JPH1provided by CGNC
Official Full Name
junctophilin 1provided by CGNC
Primary source
CGNC:11672
See related
Ensembl:ENSGALG00010002612
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See JPH1 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
6
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 2 NC_052533.1 (117827367..117907057, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 2 NC_052574.1 (117830701..117910466, complement)

Chromosome 2 - NC_052533.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107052755 Neighboring gene uncharacterized LOC121110107 Neighboring gene lymphocyte antigen 96 Neighboring gene uncharacterized LOC121110106 Neighboring gene uncharacterized LOC112531866 Neighboring gene ganglioside induced differentiation associated protein 1 Neighboring gene uncharacterized LOC121110109

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of junctional membrane complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
junctophilin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052533.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    117827367..117907057 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015282877.4 → XP_015138363.2  junctophilin-1

    UniProtKB/TrEMBL
    A0A8V0X6P0, A0A8V0XDS3
    Conserved Domains (1) summary
    cl27415
    Location:4 → 221
    COG4642; Uncharacterized conserved protein [Function unknown]

  2. XM_015282876.4 → XP_015138362.2  junctophilin-1

    UniProtKB/TrEMBL
    A0A8V0X6P0, A0A8V0XDS3
    Conserved Domains (1) summary
    cl27415
    Location:4 → 221
    COG4642; Uncharacterized conserved protein [Function unknown]

  3. XM_015282875.4 → XP_015138361.2  junctophilin-1

    UniProtKB/TrEMBL
    A0A8V0X6P0, A0A8V0XDS3
    Related
    ENSGALP00010003762.1, ENSGALT00010006039.1
    Conserved Domains (1) summary
    cl27415
    Location:4 → 221
    COG4642; Uncharacterized conserved protein [Function unknown]

  4. XM_015282874.4 → XP_015138360.2  junctophilin-1

    UniProtKB/TrEMBL
    A0A8V0X6P0, A0A8V0XDS3
    Conserved Domains (1) summary
    cl27415
    Location:4 → 221
    COG4642; Uncharacterized conserved protein [Function unknown]

  5. XM_025148000.3 → XP_025003768.1  junctophilin-1

    UniProtKB/TrEMBL
    A0A8V0X6P0, A0A8V0XDS3
    Conserved Domains (1) summary
    cl27415
    Location:4 → 221
    COG4642; Uncharacterized conserved protein [Function unknown]

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052574.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    117830701..117910466 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040665901.2 → XP_040521835.1  junctophilin-1

    UniProtKB/TrEMBL
    A0A8V0XDS3
    Conserved Domains (1) summary
    PLN03185
    Location:4 → 221
    PLN03185; phosphatidylinositol phosphate kinase; Provisional

  2. XM_040665903.2 → XP_040521837.1  junctophilin-1

    UniProtKB/TrEMBL
    A0A8V0XDS3
    Conserved Domains (1) summary
    PLN03185
    Location:4 → 221
    PLN03185; phosphatidylinositol phosphate kinase; Provisional

  3. XM_040665899.2 → XP_040521833.1  junctophilin-1

    UniProtKB/TrEMBL
    A0A8V0XDS3
    Conserved Domains (1) summary
    PLN03185
    Location:4 → 221
    PLN03185; phosphatidylinositol phosphate kinase; Provisional

  4. XM_040665902.2 → XP_040521836.1  junctophilin-1

    UniProtKB/TrEMBL
    A0A8V0XDS3
    Conserved Domains (1) summary
    PLN03185
    Location:4 → 221
    PLN03185; phosphatidylinositol phosphate kinase; Provisional

  5. XM_040665900.2 → XP_040521834.1  junctophilin-1

    UniProtKB/TrEMBL
    A0A8V0XDS3
    Conserved Domains (1) summary
    PLN03185
    Location:4 → 221
    PLN03185; phosphatidylinositol phosphate kinase; Provisional
Nucleotide Protein Strain
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