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CROT carnitine O-octanoyltransferase [ Gallus gallus (chicken) ]

Gene ID: 420533, updated on 17-Aug-2024

Summary

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Symbol
CROTprovided by CGNC
Full Name
carnitine O-octanoyltransferaseprovided by CGNC
Primary source
CGNC:6689
See related
Ensembl:ENSGALG00010004137
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See CROT in Genome Data Viewer
Location:
chromosome: 2
Exon count:
18
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 2 NC_052533.1 (20551340..20571020)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 2 NC_052574.1 (20580360..20600021)

Chromosome 2 - NC_052533.1Genomic Context describing neighboring genes Neighboring gene ribonuclease P/MRP subunit p38 Neighboring gene acyl-CoA binding domain containing 7 Neighboring gene oleoyl-ACP hydrolase Neighboring gene ATP-binding cassette, sub-family B (MDR/TAP), member 1-like A Neighboring gene ATP binding cassette subfamily B member 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Expression of miR-33 from an SREBP2 intron inhibits the expression of the fatty acid oxidation-regulatory genes CROT and HADHB in chicken liver. Shao F, et al. Br Poult Sci, 2019 Apr. PMID 30698464
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. miR-33 might play an important role in lipid metabolism in the chicken liver by negatively regulating the expression of the CROT and HADHB genes, which encode enzymes critical for lipid oxidation.
    Title: Expression of miR-33 from an SREBP2 intron inhibits the expression of the fatty acid oxidation-regulatory genes CROT and HADHB in chicken liver.
Submit: New GeneRIF Correction

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables carnitine O-octanoyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in peroxisome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
peroxisomal carnitine O-octanoyltransferase
XP_003640711.2
XP_004939321.2
XP_040521608.1
XP_040521609.1
XP_040521610.1
XP_040521611.1
XP_040551633.1
XP_418635.3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052533.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    20551340..20571020
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004939264.5 → XP_004939321.2  peroxisomal carnitine O-octanoyltransferase

    UniProtKB/TrEMBL
    A0A8V0XC10, A0A8V0XIT0
    Related
    ENSGALP00010005665.1, ENSGALT00010009646.1

  2. XM_418635.8 → XP_418635.3  peroxisomal carnitine O-octanoyltransferase

    UniProtKB/TrEMBL
    A0A8V0XC10, A0A8V0XIT0
    Related
    ENSGALP00010005669.1, ENSGALT00010009654.1

  3. XM_003640663.6 → XP_003640711.2  peroxisomal carnitine O-octanoyltransferase

    UniProtKB/TrEMBL
    A0A8V0XC10, A0A8V0XIT0
    Related
    ENSGALP00010005667.1, ENSGALT00010009649.1

  4. XM_040695699.2 → XP_040551633.1  peroxisomal carnitine O-octanoyltransferase

    UniProtKB/TrEMBL
    A0A8V0XC10, A0A8V0XIT0

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052574.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    20580360..20600021
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040665675.2 → XP_040521609.1  peroxisomal carnitine O-octanoyltransferase

    UniProtKB/TrEMBL
    A0A8V0XC10, A0A8V0XIT0

  2. XM_040665676.2 → XP_040521610.1  peroxisomal carnitine O-octanoyltransferase

    UniProtKB/TrEMBL
    A0A8V0XC10, A0A8V0XIT0

  3. XM_040665674.2 → XP_040521608.1  peroxisomal carnitine O-octanoyltransferase

    UniProtKB/TrEMBL
    A0A8V0XC10, A0A8V0XIT0

  4. XM_040665677.2 → XP_040521611.1  peroxisomal carnitine O-octanoyltransferase

    UniProtKB/TrEMBL
    A0A8V0XC10, A0A8V0XIT0
Nucleotide Protein Strain
Heading Accession and Version

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