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JAZF1 JAZF zinc finger 1 [ Gallus gallus (chicken) ]

Gene ID: 420633, updated on 17-Aug-2024

Summary

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Symbol
JAZF1provided by CGNC
Full Name
JAZF zinc finger 1provided by CGNC
Primary source
CGNC:8448
See related
Ensembl:ENSGALG00010001458
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See JAZF1 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
8
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 2 NC_052533.1 (32890791..33063734, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 2 NC_052574.1 (32943464..33115165, complement)

Chromosome 2 - NC_052533.1Genomic Context describing neighboring genes Neighboring gene 3-hydroxyisobutyrate dehydrogenase Neighboring gene Tax1 binding protein 1 Neighboring gene cAMP responsive element binding protein 5 Neighboring gene TLR4 interactor with leucine rich repeats

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A comprehensive collection of chicken cDNAs. Boardman PE, et al. Curr Biol, 2002 Nov 19. PMID 12445392
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
juxtaposed with another zinc finger protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001199618.2 → NP_001186547.1  juxtaposed with another zinc finger protein 1

    See identical proteins and their annotated locations for NP_001186547.1

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000037
    UniProtKB/TrEMBL
    A0A1D5PFG7
    Related
    ENSGALP00010001813.1, ENSGALT00010003370.1
    Conserved Domains (1) summary
    COG5189
    Location:169 → 230
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052533.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    32890791..33063734 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015281472.4 → XP_015136958.1  juxtaposed with another zinc finger protein 1 isoform X1

    Conserved Domains (1) summary
    COG5189
    Location:132 → 193
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

  2. XM_046923111.1 → XP_046779067.1  juxtaposed with another zinc finger protein 1 isoform X1

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052574.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    32943464..33115165 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046911177.1 → XP_046767133.1  juxtaposed with another zinc finger protein 1 isoform X1

  2. XM_046911176.1 → XP_046767132.1  juxtaposed with another zinc finger protein 1 isoform X1

Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases
Research Materials