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CNOT10 CCR4-NOT transcription complex subunit 10 [ Gallus gallus (chicken) ]

Gene ID: 420669, updated on 3-Dec-2024

Summary

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Official Symbol
CNOT10provided by CGNC
Official Full Name
CCR4-NOT transcription complex subunit 10provided by CGNC
Primary source
CGNC:8735
See related
Ensembl:ENSGALG00010017597
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See CNOT10 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
25
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 2 NC_052533.1 (40382192..40433058)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 2 NC_052574.1 (40432064..40483027)

Chromosome 2 - NC_052533.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121113112 Neighboring gene CKLF like MARVEL transmembrane domain containing 6 Neighboring gene dynein cytoplasmic 1 light intermediate chain 1 Neighboring gene uncharacterized LOC121109973 Neighboring gene tripartite motif containing 71 Neighboring gene uncharacterized LOC121113087

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of CCR4-NOT complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
CCR4-NOT transcription complex subunit 10

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001006364.3 → NP_001006364.1  CCR4-NOT transcription complex subunit 10

    See identical proteins and their annotated locations for NP_001006364.1

    Status: PROVISIONAL

    Source sequence(s)
    JAENSK010000037
    UniProtKB/Swiss-Prot
    Q5ZIW2
    UniProtKB/TrEMBL
    A0A8V0Z9B3
    Related
    ENSGALP00010025044.1, ENSGALT00010042554.1
    Conserved Domains (3) summary
    sd00006
    Location:296 → 321
    TPR; TPR repeat [structural motif]
    pfam00515
    Location:296 → 325
    TPR_1; Tetratricopeptide repeat
    pfam13414
    Location:249 → 321
    TPR_11; TPR repeat

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052533.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    40382192..40433058
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046923225.1 → XP_046779181.1  CCR4-NOT transcription complex subunit 10 isoform X2

    UniProtKB/TrEMBL
    A0A8V0Z295

  2. XM_046923220.1 → XP_046779176.1  CCR4-NOT transcription complex subunit 10 isoform X2

    UniProtKB/TrEMBL
    A0A8V0Z295

  3. XM_046923219.1 → XP_046779175.1  CCR4-NOT transcription complex subunit 10 isoform X2

    UniProtKB/TrEMBL
    A0A8V0Z295

  4. XM_046923234.1 → XP_046779190.1  CCR4-NOT transcription complex subunit 10 isoform X2

    UniProtKB/TrEMBL
    A0A8V0Z295

  5. XM_046923232.1 → XP_046779188.1  CCR4-NOT transcription complex subunit 10 isoform X2

    UniProtKB/TrEMBL
    A0A8V0Z295

  6. XM_040682316.2 → XP_040538250.1  CCR4-NOT transcription complex subunit 10 isoform X1

    UniProtKB/TrEMBL
    A0A8V0Z3I2, A0A8V0Z9B3
    Related
    ENSGALP00010025036.1, ENSGALT00010042546.1
    Conserved Domains (2) summary
    smart00028
    Location:293 → 322
    TPR; Tetratricopeptide repeats
    sd00006
    Location:293 → 318
    TPR; TPR repeat [structural motif]

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052574.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    40432064..40483027
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046911205.1 → XP_046767161.1  CCR4-NOT transcription complex subunit 10 isoform X2

    UniProtKB/TrEMBL
    A0A8V0Z295

  2. XM_046911206.1 → XP_046767162.1  CCR4-NOT transcription complex subunit 10 isoform X2

    UniProtKB/TrEMBL
    A0A8V0Z295

  3. XM_046911204.1 → XP_046767160.1  CCR4-NOT transcription complex subunit 10 isoform X2

    UniProtKB/TrEMBL
    A0A8V0Z295

  4. XM_046911208.1 → XP_046767164.1  CCR4-NOT transcription complex subunit 10 isoform X2

    UniProtKB/TrEMBL
    A0A8V0Z295

  5. XM_046911207.1 → XP_046767163.1  CCR4-NOT transcription complex subunit 10 isoform X2

    UniProtKB/TrEMBL
    A0A8V0Z295

  6. XM_046911203.1 → XP_046767159.1  CCR4-NOT transcription complex subunit 10 isoform X1

    UniProtKB/TrEMBL
    A0A8V0Z3I2, A0A8V0Z9B3
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5ZIW2.1 GenPept UniProtKB/Swiss-Prot:Q5ZIW2

Gene LinkOut

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