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PRPF4B pre-mRNA processing factor 4B [ Gallus gallus (chicken) ]

Gene ID: 420879, updated on 17-Aug-2024

Summary

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Symbol
PRPF4Bprovided by CGNC
Full Name
pre-mRNA processing factor 4Bprovided by CGNC
Primary source
CGNC:9712
See related
Ensembl:ENSGALG00010011318
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See PRPF4B in Genome Data Viewer
Location:
chromosome: 2
Exon count:
19
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 2 NC_052533.1 (65675730..65702346, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 2 NC_052574.1 (65624736..65651092, complement)

Chromosome 2 - NC_052533.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112531764 Neighboring gene uncharacterized LOC124417767 Neighboring gene uncharacterized LOC124417768 Neighboring gene enoyl-CoA delta isomerase 2 Neighboring gene uncharacterized LOC121109965 Neighboring gene uncharacterized LOC112531767 Neighboring gene uncharacterized LOC112531766 Neighboring gene uncharacterized LOC121113111 Neighboring gene uncharacterized LOC124417769 Neighboring gene PX domain containing 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein serine/threonine kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA cis splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in peptidyl-serine phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in peptidyl-threonine phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
serine/threonine-protein kinase PRP4 homolog
Names
PRP4 pre-mRNA processing factor 4 homolog B
XP_015131496.2
XP_040520924.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052533.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    65675730..65702346 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015276010.3 → XP_015131496.2  serine/threonine-protein kinase PRP4 homolog isoform X1

    UniProtKB/TrEMBL
    A0A8V0Y457
    Related
    ENSGALP00010015401.1, ENSGALT00010027065.1
    Conserved Domains (3) summary
    PHA03307
    Location:368 → 495
    PHA03307; transcriptional regulator ICP4; Provisional
    cd14135
    Location:784 → 1101
    STKc_PRP4; Catalytic domain of the Serine/Threonine Kinase, Pre-mRNA-Processing factor 4
    TIGR01642
    Location:284 → 449
    U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor

RNA

  1. XR_005857825.1 RNA Sequence

  2. XR_003073755.2 RNA Sequence

  3. XR_003073754.2 RNA Sequence

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052574.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    65624736..65651092 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040664990.2 → XP_040520924.1  serine/threonine-protein kinase PRP4 homolog isoform X2

    UniProtKB/TrEMBL
    A0A8V0Y457
    Conserved Domains (3) summary
    PHA03307
    Location:227 → 395
    PHA03307; transcriptional regulator ICP4; Provisional
    cd14135
    Location:684 → 1001
    STKc_PRP4; Catalytic domain of the Serine/Threonine Kinase, Pre-mRNA-Processing factor 4
    TIGR01642
    Location:171 → 277
    U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor

RNA

  1. XR_005847123.2 RNA Sequence

  2. XR_006933755.1 RNA Sequence

  3. XR_005847124.2 RNA Sequence

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001031000.1: Suppressed sequence

    Description
    NM_001031000.1: This RefSeq was suppressed temporarily based on the calculation that the annotated protein was shorter than a protein or proteins from a putative ortholog.
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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