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SNRNP48 small nuclear ribonucleoprotein U11/U12 subunit 48 [ Gallus gallus (chicken) ]

Gene ID: 420925, updated on 17-Aug-2024

Summary

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Official Symbol
SNRNP48provided by CGNC
Official Full Name
small nuclear ribonucleoprotein U11/U12 subunit 48provided by CGNC
Primary source
CGNC:9843
See related
Ensembl:ENSGALG00010000787
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
C6orf151
Orthologs
human mouse all
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Genomic context

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See SNRNP48 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
9
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 2 NC_052533.1 (77913028..77918635)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 2 NC_052574.1 (77912825..77918430)

Chromosome 2 - NC_052533.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121109618 Neighboring gene uncharacterized LOC121109620 Neighboring gene rhophilin associated tail protein 1 like Neighboring gene membrane associated ring-CH-type finger 6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
part_of U12-type spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
U11/U12 small nuclear ribonucleoprotein 48 kDa protein
Names
small nuclear ribonucleoprotein 48kDa (U11/U12)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052533.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    77913028..77918635
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040695725.2 → XP_040551659.1  U11/U12 small nuclear ribonucleoprotein 48 kDa protein

    UniProtKB/TrEMBL
    A0A8V0X3T4
    Related
    ENSGALP00010000916.1, ENSGALT00010001715.1
    Conserved Domains (1) summary
    TIGR01622
    Location:252 → 323
    SF-CC1; splicing factor, CC1-like family

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052574.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    77912825..77918430
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040663279.2 → XP_040519213.1  U11/U12 small nuclear ribonucleoprotein 48 kDa protein

    UniProtKB/TrEMBL
    A0A8V0X3T4
    Conserved Domains (1) summary
    TIGR01622
    Location:252 → 323
    SF-CC1; splicing factor, CC1-like family
Nucleotide Protein
Heading Accession and Version

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