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BCL11A BCL11 transcription factor A [ Gallus gallus (chicken) ]

Gene ID: 421199, updated on 3-Dec-2024

Summary

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Official Symbol
BCL11Aprovided by CGNC
Official Full Name
BCL11 transcription factor Aprovided by CGNC
Primary source
CGNC:51435
See related
Ensembl:ENSGALG00010017162
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See BCL11A in Genome Data Viewer
Location:
chromosome: 3
Exon count:
8
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 3 NC_052534.1 (1932585..1991479, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 3 NC_052575.1 (1899252..1958148, complement)

Chromosome 3 - NC_052534.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112532195 Neighboring gene uncharacterized LOC121110301 Neighboring gene uncharacterized LOC121110237 Neighboring gene uncharacterized LOC107052840 Neighboring gene uncharacterized LOC124417823 Neighboring gene uncharacterized LOC121110240 Neighboring gene poly(A) polymerase gamma

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of dendrite development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
B-cell lymphoma/leukemia 11A
Names
B-cell CLL/lymphoma 11A (zinc finger protein)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001031031.2 → NP_001026202.2  B-cell lymphoma/leukemia 11A

    Status: PROVISIONAL

    Source sequence(s)
    JAENSK010000059
    UniProtKB/TrEMBL
    A0A1D5PMI2, Q5F459
    Related
    ENSGALP00010024257.1, ENSGALT00010041405.1
    Conserved Domains (2) summary
    smart00355
    Location:731 → 753
    ZnF_C2H2; zinc finger
    sd00017
    Location:705 → 725
    ZF_C2H2; C2H2 Zn finger [structural motif]

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052534.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    1932585..1991479 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040696976.2 → XP_040552910.1  B-cell lymphoma/leukemia 11A isoform X4

    UniProtKB/TrEMBL
    Q5F459
    Conserved Domains (2) summary
    smart00355
    Location:371 → 393
    ZnF_C2H2; zinc finger
    sd00017
    Location:345 → 365
    ZF_C2H2; C2H2 Zn finger [structural motif]

  2. XM_040696977.2 → XP_040552911.1  B-cell lymphoma/leukemia 11A isoform X6

    UniProtKB/TrEMBL
    Q5F459
    Conserved Domains (3) summary
    smart00355
    Location:731 → 753
    ZnF_C2H2; zinc finger
    sd00017
    Location:345 → 365
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:705 → 725
    ZF_C2H2; C2H2 Zn finger [structural motif]

  3. XM_015283304.4 → XP_015138790.1  B-cell lymphoma/leukemia 11A isoform X2

    UniProtKB/TrEMBL
    Q5F459
    Conserved Domains (4) summary
    cd11674
    Location:183 → 257
    lambda-1; inner capsid protein lambda-1 or VP3
    sd00017
    Location:443 → 463
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:442 → 463
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:455 → 480
    zf-H2C2_2; Zinc-finger double domain

  4. XM_015283300.4 → XP_015138786.1  B-cell lymphoma/leukemia 11A isoform X1

    UniProtKB/TrEMBL
    Q5F459
    Conserved Domains (4) summary
    cd11674
    Location:183 → 257
    lambda-1; inner capsid protein lambda-1 or VP3
    sd00017
    Location:803 → 823
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:802 → 823
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:815 → 840
    zf-H2C2_2; Zinc-finger double domain

  5. XM_015283305.4 → XP_015138791.1  B-cell lymphoma/leukemia 11A isoform X3

    UniProtKB/TrEMBL
    Q5F459
    Conserved Domains (4) summary
    cd11674
    Location:33 → 107
    lambda-1; inner capsid protein lambda-1 or VP3
    sd00017
    Location:653 → 673
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:652 → 673
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:665 → 690
    zf-H2C2_2; Zinc-finger double domain

  6. XM_025148622.3 → XP_025004390.1  B-cell lymphoma/leukemia 11A isoform X5

    UniProtKB/TrEMBL
    Q5F459
    Conserved Domains (3) summary
    sd00017
    Location:642 → 662
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:641 → 662
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:294 → 319
    zf-H2C2_2; Zinc-finger double domain

RNA

  1. XR_001465568.4 RNA Sequence

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052575.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    1899252..1958148 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046913490.1 → XP_046769446.1  B-cell lymphoma/leukemia 11A isoform X4

    UniProtKB/TrEMBL
    Q5F459

  2. XM_046913492.1 → XP_046769448.1  B-cell lymphoma/leukemia 11A isoform X6

    UniProtKB/TrEMBL
    Q5F459

  3. XM_046913488.1 → XP_046769444.1  B-cell lymphoma/leukemia 11A isoform X2

    UniProtKB/TrEMBL
    Q5F459

  4. XM_046913487.1 → XP_046769443.1  B-cell lymphoma/leukemia 11A isoform X1

    UniProtKB/TrEMBL
    Q5F459

  5. XM_046913489.1 → XP_046769445.1  B-cell lymphoma/leukemia 11A isoform X3

    UniProtKB/TrEMBL
    Q5F459

  6. XM_046913491.1 → XP_046769447.1  B-cell lymphoma/leukemia 11A isoform X5

    UniProtKB/TrEMBL
    Q5F459

RNA

  1. XR_006933927.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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