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PNPT1 polyribonucleotide nucleotidyltransferase 1 [ Gallus gallus (chicken) ]

Gene ID: 421206, updated on 17-Aug-2024

Summary

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Symbol
PNPT1provided by CGNC
Full Name
polyribonucleotide nucleotidyltransferase 1provided by CGNC
Primary source
CGNC:6001
See related
Ensembl:ENSGALG00010019166
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See PNPT1 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
29
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 3 NC_052534.1 (296775..314198, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 3 NC_052575.1 (262476..279811, complement)

Chromosome 3 - NC_052534.1Genomic Context describing neighboring genes Neighboring gene cilia and flagella associated protein 36 Neighboring gene protein phosphatase 4 regulatory subunit 3B Neighboring gene EGF containing fibulin like extracellular matrix protein 1 Neighboring gene uncharacterized LOC107052837 Neighboring gene microRNA 217

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3'-5'-RNA exonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables polyribonucleotide nucleotidyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mitochondrial RNA 3'-end processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mitochondrial mRNA catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polyribonucleotide nucleotidyltransferase 1, mitochondrial
XP_040524696.1
XP_419282.4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052534.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    296775..314198 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_419282.8 → XP_419282.4  polyribonucleotide nucleotidyltransferase 1, mitochondrial isoform X1

    UniProtKB/TrEMBL
    A0A1D5NZ09, A0A8V0ZGB7
    Related
    ENSGALP00010027612.1, ENSGALT00010046370.1
    Conserved Domains (6) summary
    smart00316
    Location:696 → 767
    S1; Ribosomal protein S1-like RNA-binding domain
    cd11363
    Location:64 → 290
    RNase_PH_PNPase_1; Polyribonucleotide nucleotidyltransferase, repeat 1
    cd11364
    Location:383 → 613
    RNase_PH_PNPase_2; Polyribonucleotide nucleotidyltransferase, repeat 2
    PRK11824
    Location:64 → 769
    PRK11824; polynucleotide phosphorylase/polyadenylase; Provisional
    pfam03726
    Location:299 → 380
    PNPase; Polyribonucleotide nucleotidyltransferase, RNA binding domain
    cl00098
    Location:622 → 681
    KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052575.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    262476..279811 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040668762.2 → XP_040524696.1  polyribonucleotide nucleotidyltransferase 1, mitochondrial isoform X2

    UniProtKB/TrEMBL
    A0A8V0ZGB7
    Conserved Domains (1) summary
    PRK11824
    Location:56 → 761
    PRK11824; polynucleotide phosphorylase/polyadenylase; Provisional
Nucleotide Protein Strain
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