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TTC7A tetratricopeptide repeat domain 7A [ Gallus gallus (chicken) ]

Gene ID: 421414, updated on 3-Dec-2024

Summary

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Symbol
TTC7Aprovided by CGNC
Full Name
tetratricopeptide repeat domain 7Aprovided by CGNC
Primary source
CGNC:7617
See related
Ensembl:ENSGALG00010019855
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See TTC7A in Genome Data Viewer
Location:
chromosome: 3
Exon count:
22
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 3 NC_052534.1 (26628446..26790506)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 3 NC_052575.1 (26554494..26716552)

Chromosome 3 - NC_052534.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121110336 Neighboring gene uncharacterized LOC112532217 Neighboring gene multiple coagulation factor deficiency 2 Neighboring gene calmodulin 2 Neighboring gene uncharacterized LOC421415

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in phosphatidylinositol phosphate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein localization to plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tetratricopeptide repeat protein 7A

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001031055.2 → NP_001026226.1  tetratricopeptide repeat protein 7A isoform c

    See identical proteins and their annotated locations for NP_001026226.1

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000063
    UniProtKB/TrEMBL
    A0A8V0ZBP1, Q5ZIL7
    Related
    ENSGALP00010028334.1, ENSGALT00010048001.1
    Conserved Domains (3) summary
    COG0457
    Location:373 → 598
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:483 → 522
    TPR; TPR repeat [structural motif]
    pfam13432
    Location:711 → 773
    TPR_16; Tetratricopeptide repeat

  2. NM_001396801.1 → NP_001383730.1  tetratricopeptide repeat protein 7A isoform a

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000063
    UniProtKB/TrEMBL
    A0A8V0Z518, E1C895
    Related
    ENSGALP00010028325.1, ENSGALT00010047983.1
    Conserved Domains (2) summary
    TIGR02917
    Location:388 → 842
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:743 → 769
    TPR; TPR repeat [structural motif]

  3. NM_001396802.1 → NP_001383731.1  tetratricopeptide repeat protein 7A isoform b

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000063
    UniProtKB/TrEMBL
    A0A8V0Z518, A0A8V0ZIA0
    Related
    ENSGALP00010028320.1, ENSGALT00010047969.1
    Conserved Domains (2) summary
    TIGR02917
    Location:388 → 807
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:708 → 734
    TPR; TPR repeat [structural motif]

  4. NM_001396803.1 → NP_001383732.1  tetratricopeptide repeat protein 7A isoform d

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000063
    Conserved Domains (2) summary
    TIGR02917
    Location:199 → 653
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:554 → 580
    TPR; TPR repeat [structural motif]

  5. NM_001396804.1 → NP_001383733.1  tetratricopeptide repeat protein 7A isoform d

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000063
    Conserved Domains (2) summary
    TIGR02917
    Location:199 → 653
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:554 → 580
    TPR; TPR repeat [structural motif]

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052534.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    26628446..26790506
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015283703.4 → XP_015139189.1  tetratricopeptide repeat protein 7A isoform X1

    UniProtKB/TrEMBL
    A0A8V0Z518
    Conserved Domains (4) summary
    COG0457
    Location:314 → 539
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:684 → 710
    TPR; TPR repeat [structural motif]
    pfam13414
    Location:717 → 780
    TPR_11; TPR repeat
    pfam13432
    Location:652 → 714
    TPR_16; Tetratricopeptide repeat

  2. XM_015283704.3 → XP_015139190.1  tetratricopeptide repeat protein 7A isoform X2

    UniProtKB/TrEMBL
    A0A8V0ZBP1
    Conserved Domains (2) summary
    COG0457
    Location:373 → 598
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:483 → 522
    TPR; TPR repeat [structural motif]

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052575.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    26554494..26716552
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046913809.1 → XP_046769765.1  tetratricopeptide repeat protein 7A isoform X1

    UniProtKB/TrEMBL
    A0A8V0Z518

  2. XM_046913810.1 → XP_046769766.1  tetratricopeptide repeat protein 7A isoform X2

    UniProtKB/TrEMBL
    A0A8V0ZBP1
Nucleotide Protein Strain
Heading Accession and Version

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