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PLD5 phospholipase D family member 5 [ Gallus gallus (chicken) ]

Gene ID: 421501, updated on 3-Dec-2024

Summary

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Symbol
PLD5provided by CGNC
Full Name
phospholipase D family member 5provided by CGNC
Primary source
CGNC:8161
See related
Ensembl:ENSGALG00010008383
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See PLD5 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
22
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 3 NC_052534.1 (35038058..35368374)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 3 NC_052575.1 (34946233..35272031)

Chromosome 3 - NC_052534.1Genomic Context describing neighboring genes Neighboring gene serologically defined colon cancer antigen 8 Neighboring gene uncharacterized LOC121113143 Neighboring gene centrosomal protein 170 Neighboring gene endogenous retrovirus group K member 10 Gag polyprotein-like Neighboring gene uncharacterized LOC124417801 Neighboring gene microRNA mir-1784b Neighboring gene microRNA 1784 Neighboring gene microtubule associated protein 1 light chain 3 gamma Neighboring gene exonuclease 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables catalytic activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
inactive phospholipase D5

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001252016.2 → NP_001238945.1  inactive phospholipase D5 isoform 3

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000063
    UniProtKB/TrEMBL
    A0A8V0Y2G1
    Conserved Domains (3) summary
    cd09146
    Location:19 → 182
    PLDc_vPLD5_1; Putative catalytic domain, repeat 1, of inactive veterbrate phospholipase PLD5
    cd09149
    Location:218 → 411
    PLDc_vPLD5_2; Putative catalytic domain, repeat 2, of inactive veterbrate phospholipase PLD5
    PHA02820
    Location:20 → 430
    PHA02820; phospholipase-D-like protein; Provisional

  2. NM_001397392.1 → NP_001384321.1  inactive phospholipase D5 isoform 1

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000063
    UniProtKB/TrEMBL
    A0A8V0Y007, E1C1H9
    Related
    ENSGALP00010011609.1, ENSGALT00010020061.1
    Conserved Domains (2) summary
    cd09146
    Location:110 → 273
    PLDc_vPLD5_1; Putative catalytic domain, repeat 1, of inactive veterbrate phospholipase PLD5
    cd09149
    Location:309 → 502
    PLDc_vPLD5_2; Putative catalytic domain, repeat 2, of inactive veterbrate phospholipase PLD5

  3. NM_001397393.1 → NP_001384322.1  inactive phospholipase D5 isoform 2

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000063
    UniProtKB/TrEMBL
    A0A8V0Y007
    Related
    ENSGALP00010011607.1, ENSGALT00010020059.1
    Conserved Domains (2) summary
    cd09146
    Location:49 → 212
    PLDc_vPLD5_1; Putative catalytic domain, repeat 1, of inactive veterbrate phospholipase PLD5
    cd09149
    Location:248 → 441
    PLDc_vPLD5_2; Putative catalytic domain, repeat 2, of inactive veterbrate phospholipase PLD5

RNA

  1. NR_173702.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000063

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052534.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    35038058..35368374
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040697105.2 → XP_040553039.1  inactive phospholipase D5 isoform X2

    UniProtKB/TrEMBL
    A0A8V0Y2G1
    Conserved Domains (2) summary
    cd09146
    Location:20 → 183
    PLDc_vPLD5_1; Putative catalytic domain, repeat 1, of inactive veterbrate phospholipase PLD5
    cd09149
    Location:219 → 412
    PLDc_vPLD5_2; Putative catalytic domain, repeat 2, of inactive veterbrate phospholipase PLD5

  2. XM_046938832.1 → XP_046794788.1  inactive phospholipase D5 isoform X1

    UniProtKB/TrEMBL
    A0A8V0Y007, E1C1H9

RNA

  1. XR_006938652.1 RNA Sequence

  2. XR_006938653.1 RNA Sequence

  3. XR_006938654.1 RNA Sequence

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052575.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    34946233..35272031
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046913898.1 → XP_046769854.1  inactive phospholipase D5 isoform X2

    UniProtKB/TrEMBL
    A0A8V0Y2G1

  2. XM_046913897.1 → XP_046769853.1  inactive phospholipase D5 isoform X1

    UniProtKB/TrEMBL
    A0A8V0Y007, E1C1H9

RNA

  1. XR_006933945.1 RNA Sequence

  2. XR_006933946.1 RNA Sequence

  3. XR_006933947.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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