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LYST lysosomal trafficking regulator [ Gallus gallus (chicken) ]

Gene ID: 421514, updated on 3-Dec-2024

Summary

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Symbol
LYSTprovided by CGNC
Full Name
lysosomal trafficking regulatorprovided by CGNC
Primary source
CGNC:8350
See related
Ensembl:ENSGALG00010009357
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See LYST in Genome Data Viewer
Location:
chromosome: 3
Exon count:
59
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 3 NC_052534.1 (37584208..37687999)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 3 NC_052575.1 (37467618..37592022)

Chromosome 3 - NC_052534.1Genomic Context describing neighboring genes Neighboring gene G protein-coupled receptor 137B Neighboring gene nidogen 1 Neighboring gene uncharacterized LOC121110430 Neighboring gene G protein subunit gamma 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein kinase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein localization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lysosomal-trafficking regulator

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052534.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    37584208..37687999
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046939483.1 → XP_046795439.1  lysosomal-trafficking regulator isoform X1

    UniProtKB/TrEMBL
    A0A8V0XX33, A0A8V0YA43
    Related
    ENSGALP00010012842.1, ENSGALT00010022323.1

  2. XM_046939484.1 → XP_046795440.1  lysosomal-trafficking regulator isoform X1

    UniProtKB/TrEMBL
    A0A8V0XX33, A0A8V0YA43

  3. XM_015284416.4 → XP_015139902.3  lysosomal-trafficking regulator isoform X1

    UniProtKB/TrEMBL
    A0A8V0XX33, A0A8V0YA43
    Conserved Domains (4) summary
    smart01026
    Location:3124 → 3414
    Beach; Beige/BEACH domain
    cd01201
    Location:3004 → 3109
    PH_BEACH; Pleckstrin homology domain in BEACH domain containing proteins
    sd00039
    Location:3520 → 3557
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:3521 → 3770
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  4. XM_040698264.2 → XP_040554198.1  lysosomal-trafficking regulator isoform X1

    UniProtKB/TrEMBL
    A0A8V0XX33, A0A8V0YA43
    Conserved Domains (4) summary
    smart01026
    Location:3124 → 3414
    Beach; Beige/BEACH domain
    cd01201
    Location:3004 → 3109
    PH_BEACH; Pleckstrin homology domain in BEACH domain containing proteins
    sd00039
    Location:3520 → 3557
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:3521 → 3770
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  5. XM_046939482.1 → XP_046795438.1  lysosomal-trafficking regulator isoform X1

    UniProtKB/TrEMBL
    A0A8V0XX33, A0A8V0YA43

  6. XM_040698265.2 → XP_040554199.1  lysosomal-trafficking regulator isoform X1

    UniProtKB/TrEMBL
    A0A8V0XX33, A0A8V0YA43
    Related
    ENSGALP00010012836.1, ENSGALT00010022316.1
    Conserved Domains (4) summary
    smart01026
    Location:3124 → 3414
    Beach; Beige/BEACH domain
    cd01201
    Location:3004 → 3109
    PH_BEACH; Pleckstrin homology domain in BEACH domain containing proteins
    sd00039
    Location:3520 → 3557
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:3521 → 3770
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  7. XM_046939485.1 → XP_046795441.1  lysosomal-trafficking regulator isoform X2

    UniProtKB/TrEMBL
    A0A8V0Y3B5
    Related
    ENSGALP00010012828.1, ENSGALT00010022306.1

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052575.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    37467618..37592022
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046914883.1 → XP_046770839.1  lysosomal-trafficking regulator isoform X1

    UniProtKB/TrEMBL
    A0A8V0XX33

  2. XM_046914882.1 → XP_046770838.1  lysosomal-trafficking regulator isoform X1

    UniProtKB/TrEMBL
    A0A8V0XX33

  3. XM_040668501.2 → XP_040524435.1  lysosomal-trafficking regulator isoform X1

    UniProtKB/TrEMBL
    A0A8V0XX33
    Conserved Domains (4) summary
    smart01026
    Location:3124 → 3414
    Beach; Beige/BEACH domain
    cd01201
    Location:3004 → 3109
    PH_BEACH; Pleckstrin homology domain in BEACH domain containing proteins
    sd00039
    Location:3520 → 3557
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:3521 → 3770
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  4. XM_046914881.1 → XP_046770837.1  lysosomal-trafficking regulator isoform X1

    UniProtKB/TrEMBL
    A0A8V0XX33

  5. XM_040668502.2 → XP_040524436.1  lysosomal-trafficking regulator isoform X1

    UniProtKB/TrEMBL
    A0A8V0XX33
    Conserved Domains (4) summary
    smart01026
    Location:3124 → 3414
    Beach; Beige/BEACH domain
    cd01201
    Location:3004 → 3109
    PH_BEACH; Pleckstrin homology domain in BEACH domain containing proteins
    sd00039
    Location:3520 → 3557
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:3521 → 3770
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  6. XM_040668500.2 → XP_040524434.1  lysosomal-trafficking regulator isoform X1

    UniProtKB/TrEMBL
    A0A8V0XX33
    Conserved Domains (4) summary
    smart01026
    Location:3124 → 3414
    Beach; Beige/BEACH domain
    cd01201
    Location:3004 → 3109
    PH_BEACH; Pleckstrin homology domain in BEACH domain containing proteins
    sd00039
    Location:3520 → 3557
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:3521 → 3770
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  7. XM_040668504.2 → XP_040524438.1  lysosomal-trafficking regulator isoform X2

    UniProtKB/TrEMBL
    A0A8V0Y3B5

  8. XM_040668503.2 → XP_040524437.1  lysosomal-trafficking regulator isoform X1

    UniProtKB/TrEMBL
    A0A8V0XX33
    Conserved Domains (4) summary
    smart01026
    Location:3124 → 3414
    Beach; Beige/BEACH domain
    cd01201
    Location:3004 → 3109
    PH_BEACH; Pleckstrin homology domain in BEACH domain containing proteins
    sd00039
    Location:3520 → 3557
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:3521 → 3770
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
Nucleotide Protein
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