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SLC22A1 solute carrier family 22 member 1 [ Gallus gallus (chicken) ]

Gene ID: 421584, updated on 17-Aug-2024

Summary

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Symbol
SLC22A1provided by CGNC
Full Name
solute carrier family 22 member 1provided by CGNC
Primary source
CGNC:84399
See related
Ensembl:ENSGALG00010006339
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human all
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Genomic context

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See SLC22A1 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
11
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 3 NC_052534.1 (45155902..45167913, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 3 NC_052575.1 (45060554..45072552, complement)

Chromosome 3 - NC_052534.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 22 member 3 Neighboring gene uncharacterized LOC121110379 Neighboring gene uncharacterized LOC107053027 Neighboring gene solute carrier family 22 member 2 Neighboring gene uncharacterized LOC107053026 Neighboring gene insulin like growth factor 2 receptor Neighboring gene MAS1 proto-oncogene, G protein-coupled receptor

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables organic cation transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in organic cation transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
solute carrier family 22 member 2
Names
solute carrier family 22 (organic cation transporter), member 1
solute carrier family 22 member 2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052534.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    45155902..45167913 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_419622.7 → XP_419622.2  solute carrier family 22 member 2

    UniProtKB/TrEMBL
    A0A8V0XQB5, A0A8V0XSD3
    Related
    ENSGALP00010008884.1, ENSGALT00010015122.1
    Conserved Domains (1) summary
    cd17379
    Location:114 → 514
    MFS_SLC22A1_2_3; Solute carrier family 22 members 1, 2, and 3 (also called Organic cation transporters 1, 2, and 3) of the Major Facilitator Superfamily of transporters

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052575.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    45060554..45072552 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040667942.2 → XP_040523876.1  solute carrier family 22 member 2

    UniProtKB/TrEMBL
    A0A8V0XQB5, A0A8V0XSD3
    Conserved Domains (1) summary
    cd17379
    Location:114 → 514
    MFS_SLC22A1_2_3; Solute carrier family 22 members 1, 2, and 3 (also called Organic cation transporters 1, 2, and 3) of the Major Facilitator Superfamily of transporters
Nucleotide Protein Strain
Heading Accession and Version

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Molecular Biology Databases
Research Materials