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RNF144A ring finger protein 144A [ Gallus gallus (chicken) ]

Gene ID: 421922, updated on 17-Aug-2024

Summary

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Symbol
RNF144Aprovided by CGNC
Full Name
ring finger protein 144Aprovided by CGNC
Primary source
CGNC:66418
See related
Ensembl:ENSGALG00010003597
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
RNF144
Orthologs
human mouse all
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Genomic context

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See RNF144A in Genome Data Viewer
Location:
chromosome: 3
Exon count:
10
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 3 NC_052534.1 (94686592..94749943)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 3 NC_052575.1 (94495819..94559068)

Chromosome 3 - NC_052534.1Genomic Context describing neighboring genes Neighboring gene cytidine/uridine monophosphate kinase 2 Neighboring gene radical S-adenosyl methionine domain containing 2 Neighboring gene uncharacterized LOC121110324 Neighboring gene uncharacterized LOC124417868

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin conjugating enzyme binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of proteasomal ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein polyubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of ubiquitin ligase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase RNF144A
Names
ring finger protein 144

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052534.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    94686592..94749943
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040697953.2 → XP_040553887.1  E3 ubiquitin-protein ligase RNF144A isoform X1

    Conserved Domains (2) summary
    smart00647
    Location:91 → 156
    IBR; In Between Ring fingers
    cd16777
    Location:19 → 72
    mRING-HC-C4C4_RBR_RNF144A; Modified RING finger, HC subclass (C4C4-type), found in RING finger protein 144A (RNF144A)

  2. XM_025149181.3 → XP_025004949.1  E3 ubiquitin-protein ligase RNF144A isoform X2

    UniProtKB/TrEMBL
    R4GL10
    Conserved Domains (3) summary
    smart00647
    Location:91 → 156
    IBR; In Between Ring fingers
    cd16777
    Location:19 → 72
    mRING-HC-C4C4_RBR_RNF144A; Modified RING finger, HC subclass (C4C4-type), found in RING finger protein 144A (RNF144A)
    pfam01485
    Location:177 → 216
    IBR; IBR domain, a half RING-finger domain

  3. XM_040697955.2 → XP_040553889.1  E3 ubiquitin-protein ligase RNF144A isoform X1

    Conserved Domains (2) summary
    smart00647
    Location:91 → 156
    IBR; In Between Ring fingers
    cd16777
    Location:19 → 72
    mRING-HC-C4C4_RBR_RNF144A; Modified RING finger, HC subclass (C4C4-type), found in RING finger protein 144A (RNF144A)

  4. XM_046939290.1 → XP_046795246.1  E3 ubiquitin-protein ligase RNF144A isoform X2

    UniProtKB/TrEMBL
    R4GL10

  5. XM_040697956.2 → XP_040553890.1  E3 ubiquitin-protein ligase RNF144A isoform X1

    Conserved Domains (2) summary
    smart00647
    Location:91 → 156
    IBR; In Between Ring fingers
    cd16777
    Location:19 → 72
    mRING-HC-C4C4_RBR_RNF144A; Modified RING finger, HC subclass (C4C4-type), found in RING finger protein 144A (RNF144A)

  6. XM_040697957.2 → XP_040553891.1  E3 ubiquitin-protein ligase RNF144A isoform X2

    UniProtKB/TrEMBL
    R4GL10
    Related
    ENSGALP00010004935.1, ENSGALT00010008356.1
    Conserved Domains (3) summary
    smart00647
    Location:91 → 156
    IBR; In Between Ring fingers
    cd16777
    Location:19 → 72
    mRING-HC-C4C4_RBR_RNF144A; Modified RING finger, HC subclass (C4C4-type), found in RING finger protein 144A (RNF144A)
    pfam01485
    Location:177 → 216
    IBR; IBR domain, a half RING-finger domain

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052575.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    94495819..94559068
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040667515.2 → XP_040523449.1  E3 ubiquitin-protein ligase RNF144A isoform X1

    Conserved Domains (2) summary
    smart00647
    Location:91 → 156
    IBR; In Between Ring fingers
    cd16777
    Location:19 → 72
    mRING-HC-C4C4_RBR_RNF144A; Modified RING finger, HC subclass (C4C4-type), found in RING finger protein 144A (RNF144A)

  2. XM_040667519.2 → XP_040523453.1  E3 ubiquitin-protein ligase RNF144A isoform X2

    UniProtKB/TrEMBL
    R4GL10
    Conserved Domains (3) summary
    smart00647
    Location:91 → 156
    IBR; In Between Ring fingers
    cd16777
    Location:19 → 72
    mRING-HC-C4C4_RBR_RNF144A; Modified RING finger, HC subclass (C4C4-type), found in RING finger protein 144A (RNF144A)
    pfam01485
    Location:177 → 216
    IBR; IBR domain, a half RING-finger domain

  3. XM_040667517.2 → XP_040523451.1  E3 ubiquitin-protein ligase RNF144A isoform X1

    Conserved Domains (2) summary
    smart00647
    Location:91 → 156
    IBR; In Between Ring fingers
    cd16777
    Location:19 → 72
    mRING-HC-C4C4_RBR_RNF144A; Modified RING finger, HC subclass (C4C4-type), found in RING finger protein 144A (RNF144A)

  4. XM_046914754.1 → XP_046770710.1  E3 ubiquitin-protein ligase RNF144A isoform X2

    UniProtKB/TrEMBL
    R4GL10

  5. XM_040667518.2 → XP_040523452.1  E3 ubiquitin-protein ligase RNF144A isoform X1

    Conserved Domains (2) summary
    smart00647
    Location:91 → 156
    IBR; In Between Ring fingers
    cd16777
    Location:19 → 72
    mRING-HC-C4C4_RBR_RNF144A; Modified RING finger, HC subclass (C4C4-type), found in RING finger protein 144A (RNF144A)

  6. XM_040667521.2 → XP_040523455.1  E3 ubiquitin-protein ligase RNF144A isoform X2

    UniProtKB/TrEMBL
    R4GL10
    Conserved Domains (3) summary
    smart00647
    Location:91 → 156
    IBR; In Between Ring fingers
    cd16777
    Location:19 → 72
    mRING-HC-C4C4_RBR_RNF144A; Modified RING finger, HC subclass (C4C4-type), found in RING finger protein 144A (RNF144A)
    pfam01485
    Location:177 → 216
    IBR; IBR domain, a half RING-finger domain
Nucleotide Protein
Heading Accession and Version

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