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SF3B6 splicing factor 3b subunit 6 [ Gallus gallus (chicken) ]

Gene ID: 421976, updated on 17-Aug-2024

Summary

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Symbol
SF3B6provided by CGNC
Full Name
splicing factor 3b subunit 6provided by CGNC
Primary source
CGNC:51580
See related
Ensembl:ENSGALG00010008464
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
SF3B14
Orthologs
human mouse all
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Genomic context

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See SF3B6 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
4
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 3 NC_052534.1 (104032899..104036740, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 3 NC_052575.1 (103793472..103797313, complement)

Chromosome 3 - NC_052534.1Genomic Context describing neighboring genes Neighboring gene WD repeat and coiled coil containing like Neighboring gene FK506 binding protein 1B Neighboring gene tumor protein p53 inducible protein 3 Neighboring gene family with sequence similarity 228 Neighboring gene intersectin 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
splicing factor 3B subunit 6
Names
pre-mRNA branch site protein p14
splicing factor 3B, 14 kDa subunit
splicing factor 3b, subunit 6, 14kDa

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052534.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    104032899..104036740 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_419986.7 → XP_419986.1  splicing factor 3B subunit 6

    See identical proteins and their annotated locations for XP_419986.1

    UniProtKB/TrEMBL
    A0A8V0Y6V5
    Related
    ENSGALP00010011758.1, ENSGALT00010020216.1
    Conserved Domains (1) summary
    cd12241
    Location:17 → 93
    RRM_SF3B14; RNA recognition motif (RRM) found in pre-mRNA branch site protein p14 (SF3B14) and similar proteins

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052575.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    103793472..103797313 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040668237.2 → XP_040524171.1  splicing factor 3B subunit 6

    UniProtKB/TrEMBL
    A0A8V0Y6V5
    Conserved Domains (1) summary
    cd12241
    Location:17 → 93
    RRM_SF3B14; RNA recognition motif (RRM) found in pre-mRNA branch site protein p14 (SF3B14) and similar proteins
Nucleotide Protein Strain
Heading Accession and Version

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