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NPTX1 neuronal pentraxin 1 [ Gallus gallus (chicken) ]

Gene ID: 422078, updated on 17-Aug-2024

Summary

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Symbol
NPTX1provided by CGNC
Full Name
neuronal pentraxin 1provided by CGNC
Primary source
CGNC:13075
See related
Ensembl:ENSGALG00010029556
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See NPTX1 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
5
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 18 NC_052549.1 (10107477..10110801)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 18 NC_052590.1 (9707577..9710907)

Chromosome 18 - NC_052549.1Genomic Context describing neighboring genes Neighboring gene charged multivesicular body protein 6 Neighboring gene regulatory associated protein of MTOR complex 1 Neighboring gene endonuclease V Neighboring gene ring finger protein 213

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in axonogenesis involved in innervation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in neuron projection IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
neuronal pentraxin-1
Names
neuronal pentraxin I

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052549.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    10107477..10110801
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_420081.8 → XP_420081.6  neuronal pentraxin-1

    UniProtKB/TrEMBL
    A0A8V1AP67
    Related
    ENSGALP00010044131.1, ENSGALT00010071441.1
    Conserved Domains (2) summary
    smart00159
    Location:241 → 447
    PTX; Pentraxin / C-reactive protein / pentaxin family
    smart00787
    Location:147 → 247
    Spc7; Spc7 kinetochore protein

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052590.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    9707577..9710907
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040686566.2 → XP_040542500.1  neuronal pentraxin-1

    UniProtKB/TrEMBL
    A0A8V1AP67
    Conserved Domains (2) summary
    smart00159
    Location:243 → 449
    PTX; Pentraxin / C-reactive protein / pentaxin family
    smart00787
    Location:149 → 249
    Spc7; Spc7 kinetochore protein
Nucleotide Protein
Heading Accession and Version

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