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TRMT12 tRNA methyltransferase 12 homolog [ Gallus gallus (chicken) ]

Gene ID: 422259, updated on 17-Aug-2024

Summary

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Symbol
TRMT12provided by CGNC
Full Name
tRNA methyltransferase 12 homologprovided by CGNC
Primary source
CGNC:5110
See related
Ensembl:ENSGALG00010016742
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See TRMT12 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
6
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 4 NC_052535.1 (5114871..5118128)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 4 NC_052576.1 (5150427..5153685)

Chromosome 4 - NC_052535.1Genomic Context describing neighboring genes Neighboring gene NADPH oxidase 1 Neighboring gene cleavage stimulation factor subunit 2 Neighboring gene synaptotagmin like 4 Neighboring gene sushi repeat containing protein, X2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables S-adenosylmethionine-dependent methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables tRNA methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in tRNA methylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tRNA wybutosine-synthesizing protein 2 homolog
Names
tRNA methyltranferase 12 homolog
XP_025006278.2
XP_040526991.1
XP_040526992.1
XP_040556022.1
XP_046773177.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052535.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    5114871..5118128
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040700088.2 → XP_040556022.1  tRNA wybutosine-synthesizing protein 2 homolog isoform X1

    UniProtKB/TrEMBL
    A0A8V0YXA7
    Conserved Domains (1) summary
    COG2520
    Location:16 → 429
    Trm5; tRNA G37 N-methylase Trm5 [Translation, ribosomal structure and biogenesis]

  2. XM_025150510.3 → XP_025006278.2  tRNA wybutosine-synthesizing protein 2 homolog isoform X2

    UniProtKB/TrEMBL
    A0A8V0YXA7, A0A8V0Z4D0
    Related
    ENSGALP00010023413.1, ENSGALT00010040365.1
    Conserved Domains (1) summary
    COG2520
    Location:9 → 425
    Trm5; tRNA G37 N-methylase Trm5 [Translation, ribosomal structure and biogenesis]

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052576.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    5150427..5153685
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040671057.2 → XP_040526991.1  tRNA wybutosine-synthesizing protein 2 homolog isoform X1

    UniProtKB/TrEMBL
    A0A8V0YXA7
    Conserved Domains (1) summary
    COG2520
    Location:16 → 429
    Trm5; tRNA G37 N-methylase Trm5 [Translation, ribosomal structure and biogenesis]

  2. XM_040671058.2 → XP_040526992.1  tRNA wybutosine-synthesizing protein 2 homolog isoform X2

    UniProtKB/TrEMBL
    A0A8V0YXA7
    Conserved Domains (1) summary
    COG2520
    Location:9 → 425
    Trm5; tRNA G37 N-methylase Trm5 [Translation, ribosomal structure and biogenesis]

  3. XM_046917221.1 → XP_046773177.1  tRNA wybutosine-synthesizing protein 2 homolog isoform X3

Nucleotide Protein Strain
Heading Accession and Version

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