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DCTD dCMP deaminase [ Gallus gallus (chicken) ]

Gene ID: 422556, updated on 3-Dec-2024

Summary

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Symbol
DCTDprovided by CGNC
Full Name
dCMP deaminaseprovided by CGNC
Primary source
CGNC:8110
See related
Ensembl:ENSGALG00010007416
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See DCTD in Genome Data Viewer
Location:
chromosome: 4
Exon count:
7
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 4 NC_052535.1 (39566166..39597685)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 4 NC_052576.1 (39489136..39545666)

Chromosome 4 - NC_052535.1Genomic Context describing neighboring genes Neighboring gene claudin-22-like Neighboring gene claudin 22 Neighboring gene uncharacterized LOC107051752 Neighboring gene WW and C2 domain containing 2 Neighboring gene teneurin transmembrane protein 3 Neighboring gene uncharacterized LOC124417929

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables dCMP deaminase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in dTMP biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in dUMP biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
deoxycytidylate deaminase
NP_001006444.1
XP_025005399.2
XP_025005401.2
XP_046771997.1
XP_046771998.1
XP_046771999.1
XP_046772000.1
XP_046772001.1
XP_046772002.1
XP_046772003.1
XP_046772004.1
XP_046772005.1
XP_046772006.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001006444.2 → NP_001006444.1  deoxycytidylate deaminase

    See identical proteins and their annotated locations for NP_001006444.1

    Status: PROVISIONAL

    Source sequence(s)
    JAENSK010000073
    UniProtKB/TrEMBL
    A0A8V0XSW5, Q5ZJM4
    Related
    ENSGALP00010009781.1, ENSGALT00010017694.1
    Conserved Domains (1) summary
    cd01286
    Location:29 → 158
    deoxycytidylate_deaminase; Deoxycytidylate deaminase domain. Deoxycytidylate deaminase catalyzes the deamination of dCMP to dUMP, providing the nucleotide substrate for thymidylate synthase. The enzyme binds Zn++, which is required for catalytic activity. The activity of the ...

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052535.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    39566166..39597685
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025149631.3 → XP_025005399.2  deoxycytidylate deaminase isoform X1

    UniProtKB/TrEMBL
    A0A8V0XNL5, A0A8V0XSW5
    Related
    ENSGALP00010009782.1, ENSGALT00010017698.1
    Conserved Domains (1) summary
    cd01286
    Location:29 → 158
    deoxycytidylate_deaminase; Deoxycytidylate deaminase domain. Deoxycytidylate deaminase catalyzes the deamination of dCMP to dUMP, providing the nucleotide substrate for thymidylate synthase. The enzyme binds Zn++, which is required for catalytic activity. The activity of the ...

  2. XM_025149633.3 → XP_025005401.2  deoxycytidylate deaminase isoform X2

    Conserved Domains (1) summary
    cd01286
    Location:84 → 213
    deoxycytidylate_deaminase; Deoxycytidylate deaminase domain. Deoxycytidylate deaminase catalyzes the deamination of dCMP to dUMP, providing the nucleotide substrate for thymidylate synthase. The enzyme binds Zn++, which is required for catalytic activity. The activity of the ...

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052576.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    39489136..39545666
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046916041.1 → XP_046771997.1  deoxycytidylate deaminase isoform X3

  2. XM_046916044.1 → XP_046772000.1  deoxycytidylate deaminase isoform X4

  3. XM_046916048.1 → XP_046772004.1  deoxycytidylate deaminase isoform X4

  4. XM_046916042.1 → XP_046771998.1  deoxycytidylate deaminase isoform X4

  5. XM_046916049.1 → XP_046772005.1  deoxycytidylate deaminase isoform X5

  6. XM_046916045.1 → XP_046772001.1  deoxycytidylate deaminase isoform X4

  7. XM_046916046.1 → XP_046772002.1  deoxycytidylate deaminase isoform X4

  8. XM_046916043.1 → XP_046771999.1  deoxycytidylate deaminase isoform X4

  9. XM_046916047.1 → XP_046772003.1  deoxycytidylate deaminase isoform X4

  10. XM_046916050.1 → XP_046772006.1  deoxycytidylate deaminase isoform X1

    UniProtKB/TrEMBL
    A0A8V0XSW5
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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